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Report for CCDS73742.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
73742.1 |
Public |
Homo sapiens |
15 |
SLC24A1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9187](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:73742.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9187](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 73742.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000339868.10 |
ENSP00000341837.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000339868.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000341837.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000339868](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000341837](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000399033.8 |
ENSP00000381991.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000399033.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000381991.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000399033](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000381991](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001301031.1 |
NP_001287960.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001301031.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001287960.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001301031](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001287960](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001287960.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001287960.1 |
1069 |
O60721-3 |
1069 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 73742.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3210 nt): ATGGGGAAATTGATCAGGATGGGGCCGCAAGAGAGGTGGTTACTCCGGACAAAGCGGCTTCATTGGAGTC GCCTCCTCTTCTTACTGGGAATGTTGATCATCGGTTCTACTTATCAGCACCTTAGGAGACCCCGGGGCCT TTCCTCATTGTGGGCAGCAGTCTCTTCTCATCAGCCTATAAAACTGGCCAGTCGGGACCTCTCCAGTGAA GAGATGATGATGATGAGCAGCAGCCCTTCAAAACCTAGCTCCGAAATGGGGGGTAAGATGCTGGTACCCC AAGCCTCAGTGGGCAGTGATGAAGCAACACTGAGCATGACAGTGGAGAATATCCCCAGTATGCCTAAAAG AACAGCCAAGATGATCCCAACAACAACCAAGAATAATTACAGCCCAACAGCAGCAGGTACAGAAAGAAGG AAGGAAGACACCCCAACATCCAGTAGAACACTGACTTACTACACCTCAACTTCAAGCAGACAAATAGTAA AAAAGTATACCCCAACACCCAGGGGAGAAATGAAGAGCTACAGCCCAACTCAAGTGAGGGAAAAGGTGAA GTATACTCCTTCCCCACGTGGTAGAAGAGTAGGCACTTACGTGCCGTCCACATTCATGACAATGGAAACA AGCCATGCGATCACCCCCAGGACAACAGTGAAAGACAGTGACATTACAGCAACCTATAAAATACTCGAAA CCAACTCTCTTAAGAGAATAATGGAGGAAACCACCCCAACCACTCTCAAGGGAATGTTTGATAGCACCCC AACTTTTCTGACACATGAGGTAGAAGCAAACGTCTTGACTTCTCCAAGGAGCGTCATGGAAAAAAACAAC CTGTTTCCCCCCAGAAGAGTGGAAAGTAACAGCTCAGCCCATCCCTGGGGGTTAGTGGGAAAGAGCAACC CGAAGACTCCCCAGGGAACAGTCCTGTTGCATACCCCAGCCACCTCTGAGGGGCAGGTGACAATAAGCAC CATGACAGGCAGCAGCCCAGCAGAAACCAAAGCCTTCACTGCTGCCTGGAGTCTTAGGAATCCTTCACCC AGGACCAGTGTATCAGCCATCAAAACAGCCCCAGCCATAGTCTGGAGGCTGGCAAAGAAACCTTCCACAG CACCCAGCACCTCAACAACCCCTACGGTCAGGGCAAAGCTGACCATGCAGGTCCATCACTGTGTGGTTGT GAAGCCAACCCCAGCCATGCTCACCACTCCCTCCCCAAGCCTCACAACAGCCCTGCTCCCAGAGGAGCTC AGTCCTAGTCCCTCAGTGCTGCCTCCCAGCTTGCCAGACCTCCACCCCAAGGGAGAGTACCCCCCAGATC TGTTCAGTGTGGAGGAGCGGCGGCAGGGCTGGGTGGTCCTGCACGTTTTTGGCATGATGTATGTGTTTGT GGCCTTGGCCATTGTTTGCGACGAGTACTTCGTTCCAGCCCTGGGTGTCATCACAGACAAGCTGCAGATC TCCGAGGATGTGGCAGGCGCCACATTCATGGCTGCTGGAGGCTCTGCTCCTGAGCTCTTCACCTCCCTCA TCGGTGTCTTCATTTCCCACAGCAACGTGGGCATTGGTACCATTGTGGGCTCTGCTGTGTTCAACATTCT CTTTGTCATTGGCACTTGTTCCCTCTTCTCCCGAGAGATCCTCAACCTCACCTGGTGGCCCTTATTCCGT GATGTCTCCTTCTACATCCTTGACCTGATAATGCTCATCCTCTTCTTCCTGGACAGCCTCATTGCCTGGT GGGAGAGCCTGCTGCTGCTGCTGGCCTATGCCTTCTATGTGTTCACCATGAAGTGGAACAAGCATATCGA GGTCTGGGTGAAGGAGCAGCTCAGCAGGAGGCCAGTGGCCAAGGTCATGGCCTTAGAAGACCTCAGCAAG CCGGGCGATGGGGCCATTGCGGTGGATGAGCTACAGGATAACAAGAAGCTGAAGCTCCCGTCCTTGCTGA CCCGAGGGAGCAGCTCGACCTCTCTGCACAACAGCACCATCCGCAGCACCATCTACCAGCTCATGCTCCA CAGCCTGGACCCCCTGAGGGAAGTTCGCCTTGCCAAGGAGAAGGAGGAGGAGAGCTTGAATCAAGGGGCC AGAGCCCAACCCCAGGCCAAAGCAGAAAGCAAACCAGAAGAGGAGGAGCCAGCCAAGCTCCCTGCGGTCA CGGTCACACCAGCCCCTGTTCCAGACATCAAGGGAGATCAGAAGGAGAATCCAGGCGGTCAGGAAGATGT GGCTGAGGCCGAGAGCACAGGTGAAATGCCAGGCGAAGAGGGCGAAACTGCTGGTGAAGGTGAAACTGAA GAGAAAAGTGGAGGTGAAACTCAACCAGAAGGTGAAGGTGAAACTGAAACACAAGGAAAAGGAGAAGAAT GTGAAGATGAAAATGAAGCAGAAGGAAAAGGAGACAATGAAGGTGAAGATGAGGGTGAAATCCACGCAGA AGATGGTGAAATGAAAGGTAATGAAGGTGAAACTGAAAGCCAGGAACTCAGTGCTGAAAATCACGGTGAA GCCAAAAATGATGAGAAAGGTGTAGAAGATGGAGGGGGAAGTGATGGAGGGGATAGCGAAGAGGAGGAAG AGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAAGAGCAGGAGGAAGAGGAGGAGGAGGAGGAGGA AGAGGAGGAGAAGGGAAATGAAGAGCCTCTGTCCCTGGACTGGCCTGAAACCAGGCAGAAGCAGGCCATT TACCTCTTCCTTCTGCCCATCGTGTTCCCACTGTGGCTGACAGTCCCCGACGTCCGAAGGCAGGTTGGTG AAACAATAGGGATTTCTGAAGAGATCATGGGCCTGACAATCCTTGCAGCAGGCACATCAATTCCTGACCT CATCACCAGTGTGATTGTCGCTCGAAAAGGCCTGGGAGACATGGCTGTGTCAAGCTCTGTGGGCAGTAAC ATATTTGATATCACTGTGGGCTTGCCTGTTCCTTGGTTGCTTTTCTCTCTTATCAATGGATTACAGCCAG TTCCAGTCAGCAGCAATGGCTTGTTTTGTGCAATTGTTTTGCTTTTTCTCATGCTTCTGTTTGTGATCTC TTCAATTGCGTCATGTAAATGGAGAATGAACAAGATCCTGGGCTTCACAATGTTCCTCCTTTACTTTGTA TTCCTGATAATCAGTGTGATGTTAGAAGATCGAATCATATCCTGTCCTGTATCTGTCTGA
Translation (1069 aa): MGKLIRMGPQERWLLRTKRLHWSRLLFLLGMLIIGSTYQHLRRPRGLSSLWAAVSSHQPIKLASRDLSSE EMMMMSSSPSKPSSEMGGKMLVPQASVGSDEATLSMTVENIPSMPKRTAKMIPTTTKNNYSPTAAGTERR KEDTPTSSRTLTYYTSTSSRQIVKKYTPTPRGEMKSYSPTQVREKVKYTPSPRGRRVGTYVPSTFMTMET SHAITPRTTVKDSDITATYKILETNSLKRIMEETTPTTLKGMFDSTPTFLTHEVEANVLTSPRSVMEKNN LFPPRRVESNSSAHPWGLVGKSNPKTPQGTVLLHTPATSEGQVTISTMTGSSPAETKAFTAAWSLRNPSP RTSVSAIKTAPAIVWRLAKKPSTAPSTSTTPTVRAKLTMQVHHCVVVKPTPAMLTTPSPSLTTALLPEEL SPSPSVLPPSLPDLHPKGEYPPDLFSVEERRQGWVVLHVFGMMYVFVALAIVCDEYFVPALGVITDKLQI SEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCSLFSREILNLTWWPLFR DVSFYILDLIMLILFFLDSLIAWWESLLLLLAYAFYVFTMKWNKHIEVWVKEQLSRRPVAKVMALEDLSK PGDGAIAVDELQDNKKLKLPSLLTRGSSSTSLHNSTIRSTIYQLMLHSLDPLREVRLAKEKEEESLNQGA RAQPQAKAESKPEEEEPAKLPAVTVTPAPVPDIKGDQKENPGGQEDVAEAESTGEMPGEEGETAGEGETE EKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQELSAENHGE AKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQAI YLFLLPIVFPLWLTVPDVRRQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSN IFDITVGLPVPWLLFSLINGLQPVPVSSNGLFCAIVLLFLMLLFVISSIASCKWRMNKILGFTMFLLYFV FLIISVMLEDRIISCPVSV
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