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Report for CCDS7735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7735.1 Public Homo sapiens 11 TSSC4 24 110 108 CCDS HistoryNCBI Gene:10078Re-query CCDS DB by CCDS ID:7735.1Re-query CCDS DB by GeneID:10078See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7735.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333256.11 ENSP00000331087.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333256.11Link to Ensembl Protein Viewer:ENSP00000331087.6Re-query CCDS DB by Nucleotide ID:ENST00000333256Re-query CCDS DB by Protein ID:ENSP00000331087
Original member Current member EBI ENST00000451491.2 ENSP00000411224.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451491.2Link to Ensembl Protein Viewer:ENSP00000411224.2Re-query CCDS DB by Nucleotide ID:ENST00000451491Re-query CCDS DB by Protein ID:ENSP00000411224
Original member Current member NCBI NM_001297658.2 NP_001284587.1 Accepted alive Link to Nucleotide Sequence:NM_001297658.2Link to Protein Sequence:NP_001284587.1Re-query CCDS DB by Nucleotide ID:NM_001297658Re-query CCDS DB by Protein ID:NP_001284587Link to BLAST:NP_001284587.1
Original member Current member NCBI NM_001297659.2 NP_001284588.1 Accepted alive Link to Nucleotide Sequence:NM_001297659.2Link to Protein Sequence:NP_001284588.1Re-query CCDS DB by Nucleotide ID:NM_001297659Re-query CCDS DB by Protein ID:NP_001284588Link to BLAST:NP_001284588.1
Original member Current member NCBI NM_001297660.2 NP_001284589.1 Accepted alive Link to Nucleotide Sequence:NM_001297660.2Link to Protein Sequence:NP_001284589.1Re-query CCDS DB by Nucleotide ID:NM_001297660Re-query CCDS DB by Protein ID:NP_001284589Link to BLAST:NP_001284589.1
Original member Current member NCBI NM_005706.4 NP_005697.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005706.4Link to Protein Sequence:NP_005697.2Re-query CCDS DB by Nucleotide ID:NM_005706Re-query CCDS DB by Protein ID:NP_005697Link to BLAST:NP_005697.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284587.1 329 Q9Y5U2-1 329 100% 0 0
NP_001284588.1 329 Q9Y5U2-1 329 100% 0 0
NP_001284589.1 329 Q9Y5U2-1 329 100% 0 0
NP_005697.2 329 Q9Y5U2-1 329 100% 0 0

Chromosomal Locations for CCDS 7735.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 2402634 2403623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCTGAGGCAGGAACAGGTGAGCCGTCCCCCAGCGTGGAGGGCGAACACGGGACGGAGTATGACACGC
TGCCTTCCGACACAGTCTCCCTCAGTGACTCGGACTCTGACCTCAGCTTGCCCGGTGGTGCTGAAGTGGA
AGCACTGTCCCCGATGGGGCTGCCTGGGGAGGAGGATTCAGGTCCTGATGAGCCGCCCTCACCCCCGTCA
GGCCTCCTCCCAGCCACGGTGCAGCCATTCCATCTGAGAGGCATGAGCTCCACCTTCTCCCAGCGCAGCC
GTGACATCTTTGACTGCCTGGAGGGGGCGGCCAGACGGGCTCCATCCTCTGTGGCCCACACCAGCATGAG
TGACAACGGAGGCTTCAAGCGGCCCCTAGCGCCCTCAGGCCGGTCTCCAGTGGAAGGCCTGGGCAGGGCC
CATCGGAGCCCTGCCTCACCAAGGGTGCCTCCGGTCCCCGACTACGTGGCACACCCCGAGCGCTGGACCA
AGTACAGCCTGGAAGATGTGACCGAGGTCAGCGAGCAGAGCAATCAGGCCACCGCCCTGGCCTTCCTGGG
CTCCCAGAGCCTGGCTGCCCCCACTGACTGCGTGTCCTCCTTCAACCAGGATCCCTCCAGCTGTGGGGAG
GGGAGGGTCATCTTCACCAAACCAGTCCGAGGGGTCGAAGCCAGACACGAGAGGAAGAGGGTCCTGGGGA
AGGTGGGAGAGCCAGGCAGGGGCGGCCTTGGGAATCCTGCCACAGACAGGGGCGAGGGCCCTGTGGAGCT
GGCCCATCTGGCCGGGCCCGGGAGCCCAGAGGCTGAGGAGTGGGGCAGCCACCATGGAGGCCTGCAGGAG
GTGGAGGCACTGTCAGGGTCTGTCCACAGTGGGTCTGTGCCAGGTCTCCCGCCGGTGGAAACTGTTGGCT
TCCATGGCAGCAGGAAGCGGAGTCGAGACCACTTCCGGAACAAGAGCAGCAGCCCCGAGGACCCAGGTGC
TGAGGTCTGA

Translation (329 aa):
MAEAGTGEPSPSVEGEHGTEYDTLPSDTVSLSDSDSDLSLPGGAEVEALSPMGLPGEEDSGPDEPPSPPS
GLLPATVQPFHLRGMSSTFSQRSRDIFDCLEGAARRAPSSVAHTSMSDNGGFKRPLAPSGRSPVEGLGRA
HRSPASPRVPPVPDYVAHPERWTKYSLEDVTEVSEQSNQATALAFLGSQSLAAPTDCVSSFNQDPSSCGE
GRVIFTKPVRGVEARHERKRVLGKVGEPGRGGLGNPATDRGEGPVELAHLAGPGSPEAEEWGSHHGGLQE
VEALSGSVHSGSVPGLPPVETVGFHGSRKRSRDHFRNKSSSPEDPGAEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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