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Report for CCDS80013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80013.1 Public Mus musculus 3 Ndst3 23 108 98 CCDS HistoryNCBI Gene:83398Re-query CCDS DB by CCDS ID:80013.1Re-query CCDS DB by GeneID:83398See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80013.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132112.7 ENSMUSP00000120623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132112.7Link to Ensembl Protein Viewer:ENSMUSP00000120623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132112Re-query CCDS DB by Protein ID:ENSMUSP00000120623
Original member Current member EBI ENSMUST00000124803.7 ENSMUSP00000122617.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124803.7Link to Ensembl Protein Viewer:ENSMUSP00000122617.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124803Re-query CCDS DB by Protein ID:ENSMUSP00000122617
Original member Current member NCBI NM_001293682.1 NP_001280611.1 Accepted alive Link to Nucleotide Sequence:NM_001293682.1Link to Protein Sequence:NP_001280611.1Re-query CCDS DB by Nucleotide ID:NM_001293682Re-query CCDS DB by Protein ID:NP_001280611Link to BLAST:NP_001280611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280611.1 458 Q9EQH7-3 458 99.7817% 0 1

Chromosomal Locations for CCDS 80013.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 123528811 123528930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123531084 123531186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123546769 123546878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123548872 123549042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123552506 123552680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123556792 123556915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123560200 123560296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123561902 123562084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123601441 123601569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 123606846 123607010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGGATATGCAGTGTCCCCTCACCATTCAGGTGTCTACCCTGTCCATGTTCAGCTTTATGAGGCCTGGA
AGAAGGTTTGGAATATTAAAATCACCAGCACTGAAGAATATCCACATCTGAAACCAGCTAGATATCGGAG
AGGCTTCATTCACAAAAACATCATGGTTCTCCCAAGACAAACCTGTGGGCTCTTCACCCACACAATTTTC
TACAAGGAGTATCCAGGGGGTCCCAGGGAACTGGACAAGAGTATTCATGGAGGGGAGCTCTTCTTCACTG
TGGTTCTCAACCCAATCAGTATTTTCATGACCCATTTGTCTAACTATGGAAACGACCGACTGGGATTATA
TACATTTGTGAATCTAGCCAATTTTGTGCAGACCTGGACCAACCTGCGTCTTCAGACCTTGCCTCCAGCT
CAGCTGGCTCACAAGTATTTTGAGCTCTTTCCTGATCAGAAAGACCCTCTCTGGCAGAACCCCTGTGATG
ACAAACGCCACAGAGACATTTGGTCTAAAGAGAAAACCTGCGATCGTTTACCAAAATTCTTGGTAATAGG
ACCCCAGAAAACTGGTACCACTGCCTTGTGTCTGTTCCTGATTATGCATCCTTCCATCCTTAGTAACTCC
CCCAGCCCAAAATCCTTTGAGGAGGTACAGTTCTTTAATAGAAATAACTACCACAGGGGGATTGATTGGT
ACATGGATTTCTTCCCAGTCCCATCTAATGTCACCACTGACTTTCTGTTTGAGAAGAGTGCTAATTACTT
CCATTCAGAGGACGCTCCCAAGAGGGCTGCTTCTCTAGTCCCGAAAGCCAAAATCATCACCATACTCATT
GACCCGTCAGACCGAGCGTACTCCTGGTATCAGCATCAGCGATCCCATGAAGACCCTGCAGCTCTGAAAT
TTAGCTTCTATGAAGTGATCTCTGCTGGGCCCAATGCACCCTGGGAACTCCGAACCCTGCAGAAGAGATG
CCTGGTCCCTGGGTGGTATGCCAACCACATCGAGAGATGGCTTGTTTATTTCCCTCCATTTCAGTTGCTA
ATCATTGATGGACAGCAGCTAAGAACTACCCCTGCGACAGTGATGGATGAAGTCCAGAAGTTTCTAGGAG
TCTCACCTCATTATAATTACTCCGAAGCTTTAACGTTTGATTCTCATAAAGGCTTCTGGTGTCAGCTGCT
GGAAGAAGGGAAAACAAAATGCCTTGGGAAGAGTAAAGGAAGAAAATACCCCCCGATGGACTCTGATAGC
AGAGCGTTTCTGTCCAGCTACTACCGCGACCACAACGTGGAGCTCTCGAAGCTGCTGCACAGGCTGGGGC
AGCCTCTGCCCTCCTGGCTGAGACAGGAGCTGCAGAAAGTGAGGTAG

Translation (458 aa):
MGYAVSPHHSGVYPVHVQLYEAWKKVWNIKITSTEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIF
YKEYPGGPRELDKSIHGGELFFTVVLNPISIFMTHLSNYGNDRLGLYTFVNLANFVQTWTNLRLQTLPPA
QLAHKYFELFPDQKDPLWQNPCDDKRHRDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNS
PSPKSFEEVQFFNRNNYHRGIDWYMDFFPVPSNVTTDFLFEKSANYFHSEDAPKRAASLVPKAKIITILI
DPSDRAYSWYQHQRSHEDPAALKFSFYEVISAGPNAPWELRTLQKRCLVPGWYANHIERWLVYFPPFQLL
IIDGQQLRTTPATVMDEVQKFLGVSPHYNYSEALTFDSHKGFWCQLLEEGKTKCLGKSKGRKYPPMDSDS
RAFLSSYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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