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Report for CCDS47641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47641.1 Public Homo sapiens 7 FAM133B 24 110 108 CCDS HistoryNCBI Gene:257415Re-query CCDS DB by CCDS ID:47641.1Re-query CCDS DB by GeneID:257415See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438306.5 ENSP00000389783.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438306.5Link to Ensembl Protein Viewer:ENSP00000389783.1Re-query CCDS DB by Nucleotide ID:ENST00000438306Re-query CCDS DB by Protein ID:ENSP00000389783
Original member Current member EBI ENST00000427372.5 ENSP00000402843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427372.5Link to Ensembl Protein Viewer:ENSP00000402843.1Re-query CCDS DB by Nucleotide ID:ENST00000427372Re-query CCDS DB by Protein ID:ENSP00000402843
Original member Current member NCBI NM_001040057.3 NP_001035146.1 Accepted alive Link to Nucleotide Sequence:NM_001040057.3Link to Protein Sequence:NP_001035146.1Re-query CCDS DB by Nucleotide ID:NM_001040057Re-query CCDS DB by Protein ID:NP_001035146Link to BLAST:NP_001035146.1
Original member Current member NCBI NM_001288584.2 NP_001275513.1 Accepted alive Link to Nucleotide Sequence:NM_001288584.2Link to Protein Sequence:NP_001275513.1Re-query CCDS DB by Nucleotide ID:NM_001288584Re-query CCDS DB by Protein ID:NP_001275513Link to BLAST:NP_001275513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035146.1 237 Q5BKY9-2 237 100% 0 0
NP_001275513.1 237 Q5BKY9-2 237 100% 0 0

Chromosomal Locations for CCDS 47641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92562282 92562368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92566014 92566061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92569823 92569915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92575771 92575821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92577103 92577195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92577655 92577717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92578150 92578182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92578319 92578393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92579317 92579395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92581506 92581597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAACCCAATAGCAATGGCGAGATCAAGGGGTCCAATCCAGTCTTCAGGGCCAACAATACAGGATTATC
TGAATCGACCAAGGCCTACCTGGGAAGAAGTAAAAGAGCAACTAGAAAAGAAAAAGAAAGGCTCCAAGGC
TTTGGCTGAATTTGAAGAAAAAATGAATGAGAACTGGAAGAAAGAACTGGAAAAACACAGGGAGAAATTG
TTAAGTGGAAGTGAGAGCTCATCCAAAAAAAGACAGAGAAAGAAAAAAGAAAAGAAGAAATCTGGTAGGT
ATTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCTGAAGATGAGGATAAGAA
ACAAGGAAAACGGAGAAAGAAAAAGAAGAACCGTTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACT
GAATCAGACAGTAAGGATAGTTTAAAAAAGAAAAAGAAGTCAAAAGATGGAACTGAGAAAGAAAAGGATA
TTAAAGGACTCAGCAAAAAGAGAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGA
ATCAGAGTATATTGAGGAGGTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGAAAAAGCAACAGAA
AAAACAAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTCAAGTC
CTGACTCACCATAA

Translation (237 aa):
MNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWKKELEKHREKL
LSGSESSSKKRQRKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSET
ESDSKDSLKKKKKSKDGTEKEKDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATE
KTKKKKKHKKHSKKKKKKAASSSPDSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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