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Report for CCDS66560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66560.1 Public Homo sapiens 13 BORA 24 110 108 CCDS HistoryNCBI Gene:79866Re-query CCDS DB by CCDS ID:66560.1Re-query CCDS DB by GeneID:79866See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 66560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652266.1 ENSP00000498882.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652266.1Link to Ensembl Protein Viewer:ENSP00000498882.1Re-query CCDS DB by Nucleotide ID:ENST00000652266Re-query CCDS DB by Protein ID:ENSP00000498882
Original member Current member NCBI NM_001286747.2 NP_001273676.1 Accepted alive Link to Nucleotide Sequence:NM_001286747.2Link to Protein Sequence:NP_001273676.1Re-query CCDS DB by Nucleotide ID:NM_001286747Re-query CCDS DB by Protein ID:NP_001273676Link to BLAST:NP_001273676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273676.1 489 Q6PGQ7-2 489 100% 0 0

Chromosomal Locations for CCDS 66560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 72729044 72729093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72734960 72735005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72737962 72738043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72743537 72743602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72744505 72744561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72744981 72745207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72745944 72746076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72746501 72747111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72753690 72753821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72755151 72755216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGAACAAACTCTCGCCAGTCCTTCTGTTTTTAAATCAACAAAATTACCAAATAGATAAAGATGTGGAAG
ACAAAAGACAAAAAGCCATTGAAGAGTTTTTCACTAAAGATGTCATCGTACCCTCTCCTTGGACTGATCA
TGAAGGGAAACAGCTTTCACAATGTCATTCCAGTAAATGCACTAACATAAATAGTGACTCTCCAGTTGGA
AAAAAGCTGACCATTCATTCTGAGAAAAGCGATGCTGCTTGTCAGACATTGCTGTCTCTTCCTGTGGATT
TTAATTTAGAAAATATATTAGGTGACTATTTTAGAGCTGATGAATTTGCAGATCAATCTCCTGGAAACCT
CAGTTCTTCATCCCTCAGAAGAAAGCTGTTTTTAGATGGGAACGGAAGCATCTCCGACTCCTTACCTTCG
GCTTCTCCCGGAAGTCCTCACAGTGGTGTTCAAACATCACTAGAGATGTTTTATTCAATAGATTTGTCTC
CTGTAAAGTGTAGGAGCCCCTTGCAGACACCAAGTTCGGGGCAGTTTTCTTCTAGCCCTATTCAGGCTAG
TGCAAAAAAATACAGCTTGGGAAGCATAACTAGTCCTTCGCCTATTTCTTCACCCACTTTCTCACCAATT
GAATTTCAGATAGGAGAGACTCCACTCTCAGAACAAAGGAAGTTTACTGTTCATTCTCCTGATGCTTCAT
CTGGAACAAATTCTAATGGGATAACTAATCCGTGTATCAGAAGTCCTTATATAGATGGCTGCTCGCCAAT
TAAAAATTGGTCTCCTATGAGACTTCAGATGTATAGTGGTGGTACTCAGTATCGGACCTCAGTGATTCAG
ATACCTTTTACTCTTGAGACTCAAGGTGAAGATGAGGAAGATAAAGAGAATATTCCTTCCACAGATGTCT
CATCACCCGCCATGGATGCTGCTGGAATACACCTACGGCAGTTTAGTAATGAGGCTTCTACCCATGGTAC
ACATTTGGTTGTGACTGCCATGTCTGTTACACAAAATCAGTCCAGTGCTTCTGAGAAAGAATTAGCACTG
TTGCAGGATGTTGAAAGGGAGAAAGACAATAACACTGTGGATATGGTTGATCCTATAGAGATAGCAGATG
AGACCACTTGGATTAAGGAGCCGGTTGATAATGGCAGTTTACCCATGACTGATTTTGTAAGTGGCATTGC
CTTCAGTATTGAAAACTCTCATATGTGCATGTCACCTCTTGCTGAAAGCAGTGTCATTCCTTGTGAAAGC
AGTAACATTCAGATGGATAGTGGCTATAATACGCAGAATTGTGGAAGCAATATTATGGATACAGTTGGGG
CAGAAAGTTACTGCAAAGAAAGTGATGCACAAACATGTGAAGTTGAGAGTAAATCTCAAGCATTTAATAT
GAAGCAAGACCACACAACACAGAGGTGTTGGATGAAAACAGCAAGCCCTTTTCAATGCAGCAGTCCATAG

Translation (489 aa):
MNKLSPVLLFLNQQNYQIDKDVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVG
KKLTIHSEKSDAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPI
EFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSVIQ
IPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQNQSSASEKELAL
LQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCES
SNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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