NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS59169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59169.1 Public Homo sapiens X SNX12 24 110 108 CCDS HistoryNCBI Gene:29934Re-query CCDS DB by CCDS ID:59169.1Re-query CCDS DB by GeneID:29934See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276105.3 ENSP00000276105.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276105.3Link to Ensembl Protein Viewer:ENSP00000276105.3Re-query CCDS DB by Nucleotide ID:ENST00000276105Re-query CCDS DB by Protein ID:ENSP00000276105
Original member Current member NCBI NM_001256188.2 NP_001243117.1 Accepted alive Link to Nucleotide Sequence:NM_001256188.2Link to Protein Sequence:NP_001243117.1Re-query CCDS DB by Nucleotide ID:NM_001256188Re-query CCDS DB by Protein ID:NP_001243117Link to BLAST:NP_001243117.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243117.1 158 Q9UMY4-3 158 100% 0 0

Chromosomal Locations for CCDS 59169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71061016 71061118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71061843 71061967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71062854 71062949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71068154 71068306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGTCGGACACGGCAGTAGCTGATACCCGGCGCCTTAACTCGAAGCCGCAGGACCTGACCGACGCTTACG
GGCCGCCAAGTAACTTCCTGGAGATCGACATCTTTAATCCTCAGACGGTGGGCGTGGGACGCGCGCGCTT
CACCACCTATGAGACAAACCTACCTATCTTCAAGCTAAAGGAGTCCTGCGTACGGCGGCGCTACAGTGAC
TTTGAGTGGCTGAAAAATGAGCTGGAGAGAGATAGCAAGATTGTAGTACCACCACTGCCTGGGAAAGCCT
TGAAGCGGCAGCTCCCTTTCCGAGGAGATGAAGGGATCTTTGAGGAGTCTTTCATCGAAGAAAGGAGGCA
GGGCCTCGAGCAGTTTATTAACAAAATTGCTGGGCACCCACTGGCTCAGAATGAACGCTGCCTACACATG
TTCCTGCAAGAGGAGGCAATTGACAGGAACTACGTCCCGGGGAAGGTGCGCCAGTAG

Translation (158 aa):
MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYETNLPIFKLKESCVRRRYSD
FEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHM
FLQEEAIDRNYVPGKVRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH