NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56336.1 Public Homo sapiens 4 CFAP299 24 110 108 CCDS HistoryNCBI Gene:255119Re-query CCDS DB by CCDS ID:56336.1Re-query CCDS DB by GeneID:255119See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508675.1 ENSP00000425786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508675.1Link to Ensembl Protein Viewer:ENSP00000425786.1Re-query CCDS DB by Nucleotide ID:ENST00000508675Re-query CCDS DB by Protein ID:ENSP00000425786
Original member Current member NCBI NM_001206997.2 NP_001193926.1 Accepted alive Link to Nucleotide Sequence:NM_001206997.2Link to Protein Sequence:NP_001193926.1Re-query CCDS DB by Nucleotide ID:NM_001206997Re-query CCDS DB by Protein ID:NP_001193926Link to BLAST:NP_001193926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193926.1 250 Q6V702-1 250 100% 0 0

Chromosomal Locations for CCDS 56336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 80335769 80335879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80362754 80362884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80583093 80583183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80608333 80608383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80869993 80870135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80944810 80944939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 80963517 80963612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGATCAGGAAGAGGGGCTGAAGGCCTTGGACAATATTGTCACTCAATTCAACGCCTATGAAGATTTCC
TGGACTCGCAGATCACTACTGTGGACTTGTACTACCTGGAGGATGAAACCCTGGCCCGCCAGTTGGTGGA
GCTAGGCTACCGAGGGACTGGAGAGAGAGTGAAAAGGGAAGATTTTGAAGCAAGGAAAGCGGCTATAGAG
ATTGCAAGACTGGCTGAAAGAGCTCAGCAAAAGACGCTAACAAGTGCTGGTAAAGACCTACAAGATAATT
TTCTGACGGCCCTGGCAATGAGAGAAGAAGACAATCGCAGTGGAAAACTGAGTCTAAATCAACAGGAGAC
TGATGCTGCTCATATCTTGAAGAAGCAACTGGCATCCGTGATCTTTATTCGTGACAGAAATTCTCATGGG
CAAGAGATATCAGGATACATCGACTATGCCCACAGGCTAAAGACGGAAGATTTTGAAGTCTACTTTACTG
GAAAAAAAAGACTTCTTCCAAGGCCTACAGATATAAGCTTTTACAACTGGGACGCTGATATTGCTGTTAG
TAATTCAAGTCCCAACTATCAAGTGATTGCCGATAATCCAGAAGGCTTACTTTTCAGATACAAAAGAGAC
AGAAAAATTCTTAATGTGGACCCAAAGGCGCAGCCAGGTGACAACTCTACTAGAATCACTATCCTGACAG
AACTCTACGTACAAGCTGTCATTTTTGACCACATTTCCAGAAGGAAGACTTAA

Translation (250 aa):
MDQEEGLKALDNIVTQFNAYEDFLDSQITTVDLYYLEDETLARQLVELGYRGTGERVKREDFEARKAAIE
IARLAERAQQKTLTSAGKDLQDNFLTALAMREEDNRSGKLSLNQQETDAAHILKKQLASVIFIRDRNSHG
QEISGYIDYAHRLKTEDFEVYFTGKKRLLPRPTDISFYNWDADIAVSNSSPNYQVIADNPEGLLFRYKRD
RKILNVDPKAQPGDNSTRITILTELYVQAVIFDHISRRKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH