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Report for CCDS56004.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56004.1 |
Public |
Homo sapiens |
16 |
HYDIN |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54768](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:56004.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:54768](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 56004.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000538248.5 |
ENSP00000444970.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000538248.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000444970.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000538248](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000444970](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001198542.1 |
NP_001185471.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001198542.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001185471.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001198542](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001185471](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001185471.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001185471.1 |
950 |
Q4G0P3-8 |
950 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56004.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2853 nt): ATGGAGAGTGCGGGCGGCTTCAAGCTGGGTATGGAGCCCCTCAGCGGCGGCGGGGTCTGTGAGAAAAAAA AATTACTAAAAATGACAAGTAGAAGACTTGAGGAGTCCATGGGGGCTGTTCAGATGGGATTGGTCAATAT GTTCAAAGGATTTCAAAGCAAGGTTTTGCCACCCCTGAGTCCAAAGGTGGTTACAGAAGAAGAAGTAAAC CGAATGCTTACACCCTCAGAGTTCCTGAAGGAAATGTCCCTGACCACCGAGCAGAGACTGGCAAAAACAC GTTTGATGTGCCGACCACAGATCATCGAACTCTTAGATATGGGGGAAACAACACATCAGAAGTTTTCAGG AATTGACCTGGATCAGGCATTATTCCAGCCCTTTCCATCAGAAATTATATTTCAGAACTACACTCCCTGT GAAGTCTATGAAGTTCCACTGATTTTGAGGAACAATGACAAAATTCCAAGGTTGGTGAAAGTTGTGGAAG AAAGTTCGCCTTACTTTAAAGTAATCAGCCCCAAAGATATTGGCCACAAAGTGGCTCCTGGAGTGCCTTC CATATTCCGAATCCTCTTTACTCCAGAGGAGAACAAGGATTACGCCCATACGTTGACCTGTGTTACTGAA AGAGAAAAGTTTATTGTACCCATCAAAGCTAGAGGGGCACGAGCCATTCTCGATTTTCCTGACAAGCTGA ATTTTTCCACTTGTCCTGTCAAATACAGCACCCAGAAGATTCTGCTGGTACGAAACATTGGCAACAAAAA TGCTGTATTTCACATCAAAACTTGTAGGCCTTTCTCTATAGAACCAGCTATTGGAACTCTTAATGTGGGA GAGTCCATGCAACTGGAAGTGGAGTTTGAGCCACAGAGTGTGGGCGATCACAGTGGAAGACTTATCGTGT GTTATGACACAGGTGAAAAGGTGTTTGTATCTCTCTATGGAGCTGCCATAGACATGAATATAAGGCTGGA TAAGAATTCCTTGACCATCGAGAAAACCTACATATCTCTGGCCAATCAGCGAACTATAACCATTCACAAT CGCAGTAATATCATTGCCCATTTCCTGTGGAAGGTATTTGCTACCCAGCAAGAAGAGGACAGAGAAAAAT ATAGGGCCTGTGATGATCTGATCAAAGAGGAGAAGGATGAGACTGATGAGTTTTTTGAAGAGTGCATTAC TGATCCTTTACTCCGAGAACATCTTTCTGTTCTGTCCCGAACCTTTGCGAATCAGAGGAGGCTGGTGCAG GGAGACAGCAAGCTGTTCTTCAATAACGTTTTCACTGTGGAGCCCCTGGAAGGTGATGTCTGGCCCAACT CATCAGCTGAAATCACCGTGTACTTTAACCCACTAGAAGCCAAGCTCTATCAACAGACCATTTACTGCGA CATTTTAGGCCGAGAAATCCGTCTGCCCCTCCGAATCAAAGGGGAAGGCATGGGACCTAAGATTCACTTC AACTTTGAATTGCTGGATATTGGGAAAGTTTTCACTGGATCTGCACATTGTTATGAGGCGATACTGTACA ACAAAGGCAGCATCGATGCTCTCTTCAACATGACCCCTCCAACTTCAGCTTTGGGGGCCTGCTTTGTTTT CAGTCCCAAGGAAGGCATCATTGAACCAAGTGGAGTCCAAGCTATCCAGATCTCCTTCAGCTCTACCATC CTGGGAAACTTTGAAGAAGAGTTCCTGGTCAATGTCAATGGGTCACCTGAGCCTGTGAAACTGACCATTA GAGGCTGTGTCATTGGACCTACCTTCCATTTTAATGTTCCAGCTCTGCACTTTGGTGATGTTTCCTTTGG GTTTCCTCATACCTTGATATGTTCCCTCAATAATACCTCTTTGATCCCCATGACTTACAAACTGCGTATC CCTGGGGATGGCCTTGGCCATAAAAGCATTTCATATTGTGAGCAGCATGTGGACTACAAAAGACCATCTT GGACCAAGGAAGAAATATCCTCAATGAAACCAAAAGAATTCACCATCTCTCCTGACTGTGGCACCATTCG CCCCCAGGGATTTGCTGCTATCAGGGTGACATTATGCTCCAACACTGTGCAGAAATACGAGCTGGCACTC GTGGTGGACGTGGAGGGCATCGGAGAAGAGGTGCTGGCGCTCTTAATTACAGCAAGGTGTGTTGTACCTG CCCTCCACCTGGTCAATACAGAGGTGGACTTTGGGCACTGCTTCCTGAAGTACCCGTATGAGAAAACACT CCAGCTTGCCAATCAAGATGACCTCCCAGGATTCTATGAGGTCCAGCCTCAGGTGTGTGAGGAGGTGCCT ACTGTGCTGTTTTCCAGCCCCACCCCCAGCGGGGTCATCTCCCCAAGCAGCACCATCCACATACCACTGG TCCTGGAGACCCAGGTCACTGGAGAACACAGATCCACGGTTTACATCTCAATCTTTGGGAGCCAGGACCC CCCTTTGGTATGTCACTTAAAGAGCGCTGGAGAAGGCCCAGTTATCTACGTCCATCCCAATCAAGTGGAC TTCGGGAATATCTACGTCCTAAAAGACTCTTCCAGGATTCTCAACCTATGCAACCAGTCCTTCATTCCCG CATTTTTCCAGGCACACATGGCACACAAAAAATCCCTTTGGACGATTGAACCCAATGAAGGCATGGTTCC TCCAGAAACTGATGTTCAACTGGCACTGACCGCCAACCTGAATGACACACTGACATTCAAGGACTGTGTT ATTTTGGACATTGAAAATAGCAGTACCTATCGGATTCCTGTTCAGGCTTCCGGAACTGGTTCCACTATTG TTTCAGATAAGCCCTTTGCTCCAGAACTCAATTTGGGGGCACATTTTAGGTAA
Translation (950 aa): MESAGGFKLGMEPLSGGGVCEKKKLLKMTSRRLEESMGAVQMGLVNMFKGFQSKVLPPLSPKVVTEEEVN RMLTPSEFLKEMSLTTEQRLAKTRLMCRPQIIELLDMGETTHQKFSGIDLDQALFQPFPSEIIFQNYTPC EVYEVPLILRNNDKIPRLVKVVEESSPYFKVISPKDIGHKVAPGVPSIFRILFTPEENKDYAHTLTCVTE REKFIVPIKARGARAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVG ESMQLEVEFEPQSVGDHSGRLIVCYDTGEKVFVSLYGAAIDMNIRLDKNSLTIEKTYISLANQRTITIHN RSNIIAHFLWKVFATQQEEDREKYRACDDLIKEEKDETDEFFEECITDPLLREHLSVLSRTFANQRRLVQ GDSKLFFNNVFTVEPLEGDVWPNSSAEITVYFNPLEAKLYQQTIYCDILGREIRLPLRIKGEGMGPKIHF NFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSTI LGNFEEEFLVNVNGSPEPVKLTIRGCVIGPTFHFNVPALHFGDVSFGFPHTLICSLNNTSLIPMTYKLRI PGDGLGHKSISYCEQHVDYKRPSWTKEEISSMKPKEFTISPDCGTIRPQGFAAIRVTLCSNTVQKYELAL VVDVEGIGEEVLALLITARCVVPALHLVNTEVDFGHCFLKYPYEKTLQLANQDDLPGFYEVQPQVCEEVP TVLFSSPTPSGVISPSSTIHIPLVLETQVTGEHRSTVYISIFGSQDPPLVCHLKSAGEGPVIYVHPNQVD FGNIYVLKDSSRILNLCNQSFIPAFFQAHMAHKKSLWTIEPNEGMVPPETDVQLALTANLNDTLTFKDCV ILDIENSSTYRIPVQASGTGSTIVSDKPFAPELNLGAHFR
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