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Report for CCDS7348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7348.1 Public Homo sapiens 10 VDAC2 24 110 108 CCDS HistoryNCBI Gene:7417Re-query CCDS DB by CCDS ID:7348.1Re-query CCDS DB by GeneID:7417See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332211.11 ENSP00000361686.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332211.11Link to Ensembl Protein Viewer:ENSP00000361686.3Re-query CCDS DB by Nucleotide ID:ENST00000332211Re-query CCDS DB by Protein ID:ENSP00000361686
Original member Current member EBI ENST00000543351.5 ENSP00000443092.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543351.5Link to Ensembl Protein Viewer:ENSP00000443092.1Re-query CCDS DB by Nucleotide ID:ENST00000543351Re-query CCDS DB by Protein ID:ENSP00000443092
Original member Current member NCBI NM_001184823.2 NP_001171752.1 Accepted alive Link to Nucleotide Sequence:NM_001184823.2Link to Protein Sequence:NP_001171752.1Re-query CCDS DB by Nucleotide ID:NM_001184823Re-query CCDS DB by Protein ID:NP_001171752Link to BLAST:NP_001171752.1
Original member Current member NCBI NM_001324088.2 NP_001311017.1 Accepted alive Link to Nucleotide Sequence:NM_001324088.2Link to Protein Sequence:NP_001311017.1Re-query CCDS DB by Nucleotide ID:NM_001324088Re-query CCDS DB by Protein ID:NP_001311017Link to BLAST:NP_001311017.1
Original member Current member NCBI NM_001391963.1 NP_001378892.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001391963.1Link to Protein Sequence:NP_001378892.1Re-query CCDS DB by Nucleotide ID:NM_001391963Re-query CCDS DB by Protein ID:NP_001378892Link to BLAST:NP_001378892.1
Original member Current member NCBI NM_003375.5 NP_003366.2 Accepted alive Link to Nucleotide Sequence:NM_003375.5Link to Protein Sequence:NP_003366.2Re-query CCDS DB by Nucleotide ID:NM_003375Re-query CCDS DB by Protein ID:NP_003366Link to BLAST:NP_003366.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171752.1 294 P45880-3 294 100% 0 0
NP_001311017.1 294 P45880-3 294 100% 0 0
NP_001378892.1 294 P45880-3 294 100% 0 0
NP_003366.2 294 P45880-3 294 100% 0 0

Chromosomal Locations for CCDS 7348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75211159 75211189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75212230 75212298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75214021 75214070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75219063 75219215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75219304 75219356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75220743 75220970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75222252 75222402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75229644 75229701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75230898 75230989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGACCCACGGACAGACTTGCGCGCGTCCAATGTGTATTCCTCCATCATATGCTGACCTTGGCAAAG
CTGCCAGAGATATTTTCAACAAAGGATTTGGTTTTGGGTTGGTGAAACTGGATGTGAAAACAAAGTCTTG
CAGTGGCGTGGAATTTTCAACGTCCGGTTCATCTAATACAGACACTGGTAAAGTTACTGGGACCTTGGAG
ACCAAATACAAGTGGTGTGAGTATGGTCTGACTTTCACAGAAAAGTGGAACACTGATAACACTCTGGGAA
CAGAAATCGCAATTGAAGACCAGATTTGTCAAGGTTTGAAACTGACATTTGATACTACCTTCTCACCAAA
CACAGGAAAGAAAAGTGGTAAAATCAAGTCTTCTTACAAGAGGGAGTGTATAAACCTTGGTTGTGATGTT
GACTTTGATTTTGCTGGACCTGCAATCCATGGTTCAGCTGTCTTTGGTTATGAGGGCTGGCTTGCTGGCT
ACCAGATGACCTTTGACAGTGCCAAATCAAAGCTGACAAGGAATAACTTTGCAGTGGGCTACAGGACTGG
GGACTTCCAGCTACACACTAATGTCAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAGTTTGT
GAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGGTACCAACTGCACTCGTTTTGGCATTGCAG
CTAAATATCAGTTGGATCCCACTGCTTCCATTTCTGCAAAAGTCAACAACTCTAGCTTAATTGGAGTAGG
CTATACTCAGACTCTGAGGCCTGGTGTGAAGCTTACACTCTCTGCTCTGGTAGATGGGAAGAGCATTAAT
GCTGGAGGCCACAAGGTTGGGCTCGCCCTGGAGTTGGAGGCTTAA

Translation (294 aa):
MATHGQTCARPMCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLE
TKYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKRECINLGCDV
DFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVC
EDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSIN
AGGHKVGLALELEA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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