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Report for CCDS54754.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54754.2 |
Public |
Homo sapiens |
4 |
DTHD1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:401124](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54754.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:401124](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 54754.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 54754.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000639862.2 |
ENSP00000492542.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000639862.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000492542.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000639862](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000492542](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001170700.3 |
NP_001164171.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001170700.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001164171.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001170700](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001164171](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001164171.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 54754.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2721 nt): ATGGATATGGAATACATGGGCTCAGGTAAACTGGGCCAAATATTGAAGCAGATTTGGAGACAAAACCAGA TGCTAAAGCAGGCACTCTTGGGTGATGACCTTTGTGAGGGGGCTGGTGGGGCCACTTGGATGGCCACTGT GGTCTTTCTGGGTCAGGAACTCAGCAGTGCCCTTCACCAGCTGCTGGAGCACACCTCAGGCACCCTGCGT TCCACCTGCCAGCAGCTGCATGTGCTGCTTGACAAAGAGAATCAATGTGTCTCGAGAAAAGAAATCATTA CTTTCATAGACTGCCTCATAAAAATAACTGAACATTTGGGGAGCACTGCTGCACTTCTAAAGAAAGAAGA AAAGGAGATTTGTAATTTATGCGGCATGCATGATGAATGTACTCCACAGCAGACAATGTCCTCCATTCAA GATACCAAAGCAGCAGACATTGCTGCAAGAGGGGAACTAAATGTCATAGAAACAGCTACTGTTTCTCCCA CAAATGGAGAGGAAAGTCATTACACAAACCAGGTCCAGTTAGAAAAAAATAAAACACATATGAGTTCAGC ATTAGTGGAAAAAGAAAACAATACATCACTGAATGGACGTGTACTGGGGCAAGAAGAGTCACAGAATAAA ATGTTCCCAGATAATGCAGAAAATGAAGATGATAAACAAATAGAACACATGACTGTTGAGAACATAAATG GCAACAGGGAAGAGACTCATGGCATAATTCAGACAACAGAGACAGAAATTCAAGAGACTTCAGAAAGCCC AAGAGAAGAGATGACCACATCCTCAATAATATGTGATATCTCCAAGAAATATATAAATAGTACTCTTCCC AATGATTCAGAGAATATAAAGCACAAGAATAACATAATGGAAAAGGAGTATCTTGATGTGCTGAGTGATG TTACTGGCCCCCAAGTGTCTTGTTATATTACAGCACCATCATATGTTCTACAACAACTAGAATGCCGGAT AATAAATCACATGAGTTCTTTAATAGTGGGTGATAATGAAGAGTTAGTTAGCAACGTCATAACTATTGAA TGCTCAGATAAGGAAAAGAGAGTTCCATTTCCAATAGGCATTGCAATTCCATTTACTGCACGTTACAGAG GAAATTACAGAGATATCATGGTGAAAGTGTGTGACATAAACCTTCAATCAAGTTACCTAAACCCAAATTC ACTAGAAGGAATGAAGGGAGGTTATAAGGGGACCTGTGCTTCAGTAAAAGTTTACAAATTGGGTATCTTT TCTGTTGTGTCTTGTTTAAAGAAAGAGTCGTTCACAGTAACAAAGAAAGGCCTCGCTCTTAAGTCAAGCA TGGATTCCCGAATATCCTTAAATTACCCTCCAGGAGTTTTTACCTCTCCAGTGCTGGTGCAGTTAAAGAT CCAACCAGTTGACCCAGCTCTGGTGGCACATTTAAAAGCACAGCAAGATACTTTCTACTCAGTCCAATCC ACAAGCCCTCTGATTCACATTCAGCACCCATCAACTTATCCTTTTCAGAAGCCAGTCACTTTGTTTTTAC CTTGTTCTCCATACCTTGATAAAAACAACCTTGGTTCTGAGATAGATCATAAAAGAAGAGCAAGTGCCAC AATAAATAGGATTACACCTTCGTATTTCAACCGGACAAAAATTGCCTCCATAAGAAAACCTAGGAAAAAT GCCAGTGAATGTTTGAAATTACTGGGATTCAGAAGCCAAGACAGTGGTTGGTGTGGGCTTGATGATGTTG TGAAAACCATACAGAGCGGCTTGGTATCAGTTGAATTGTATGAACATTTGGAGAGGTTTATTGTACTTCA CCTCTCTTCCACCATGGACAATAGTCATTTGGTTACTTTTGTGAAATCTTTAGAGGAAGCCATGCTCAGC ACCACTGCCTGCATAGTACTGTCTCACCAGAAGGACAATCCACATAGAATAGCTGTTTTAGTGGTGCCTT CCAAAGATTTAAGCCAGGTGCTTAAGGACCTGCACTTGGAAGGGTTTGGAGGACCTCCAGAGCCATCTCG TCATTTCCAAGTTCGAGAAGGAGAACAACTTCTTTTAAGATTTACTGGAAACATATTTGCTTCAAGCAAC GGGAAGGATTATGGAAAAGACTACACACTTATTTTTCACTTGCAAAGAAAACCTAGGCTGGAACTCCAAA TCAAAGAAGTGGACGAATTTGGAAACTATAGTTGCCCTCATTACAAAGGCACCATTGTCGTTTATAAAGT ACCTAAAGGAAAGATAGTCCCCAACTTGAATCAATCTCTCGTAATTAATGAAAACCATTCTCAGTTGCCA ATTTGCAAATTACCATTGAAATTGCCAAAGCATAAGAAATTAATCAACCGTCCACAGAGTACCAAAAGAG TTTCTAAGGATCCTGTAGAAGCCCTTTGGGATAACTTGCTCCATTGGCTGGCTGAGGAGCTCTCAGAAGA AAATGCTGAGTCTCTTTCCTCAACTCTCCCTCTGCGCCGTAGCACCATTCAGCTCATCAAACTCAAGAAC CCTGATGATCTCACAGAACAGATCCACGAGTTTCTTTGCTTCTGGAAAAAATCGCTTCCAACTTTCACCG ACAAACTTCGCCTCCTGGCTCGACATCTCCGCAAGATTGGCAGGAGTGATCTTGCAGAAGAGCTCAAATT CAAGTGGGAAAATAAAGTGTTCACTGAACCACAGCAGTGTTTTGATGTAGCCCCTGAGTAA
Translation (906 aa): MDMEYMGSGKLGQILKQIWRQNQMLKQALLGDDLCEGAGGATWMATVVFLGQELSSALHQLLEHTSGTLR STCQQLHVLLDKENQCVSRKEIITFIDCLIKITEHLGSTAALLKKEEKEICNLCGMHDECTPQQTMSSIQ DTKAADIAARGELNVIETATVSPTNGEESHYTNQVQLEKNKTHMSSALVEKENNTSLNGRVLGQEESQNK MFPDNAENEDDKQIEHMTVENINGNREETHGIIQTTETEIQETSESPREEMTTSSIICDISKKYINSTLP NDSENIKHKNNIMEKEYLDVLSDVTGPQVSCYITAPSYVLQQLECRIINHMSSLIVGDNEELVSNVITIE CSDKEKRVPFPIGIAIPFTARYRGNYRDIMVKVCDINLQSSYLNPNSLEGMKGGYKGTCASVKVYKLGIF SVVSCLKKESFTVTKKGLALKSSMDSRISLNYPPGVFTSPVLVQLKIQPVDPALVAHLKAQQDTFYSVQS TSPLIHIQHPSTYPFQKPVTLFLPCSPYLDKNNLGSEIDHKRRASATINRITPSYFNRTKIASIRKPRKN ASECLKLLGFRSQDSGWCGLDDVVKTIQSGLVSVELYEHLERFIVLHLSSTMDNSHLVTFVKSLEEAMLS TTACIVLSHQKDNPHRIAVLVVPSKDLSQVLKDLHLEGFGGPPEPSRHFQVREGEQLLLRFTGNIFASSN GKDYGKDYTLIFHLQRKPRLELQIKEVDEFGNYSCPHYKGTIVVYKVPKGKIVPNLNQSLVINENHSQLP ICKLPLKLPKHKKLINRPQSTKRVSKDPVEALWDNLLHWLAEELSEENAESLSSTLPLRRSTIQLIKLKN PDDLTEQIHEFLCFWKKSLPTFTDKLRLLARHLRKIGRSDLAEELKFKWENKVFTEPQQCFDVAPE
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