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Report for CCDS53718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53718.1 Public Homo sapiens 11 IFT46 24 110 108 CCDS HistoryNCBI Gene:56912Re-query CCDS DB by CCDS ID:53718.1Re-query CCDS DB by GeneID:56912See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264021.8 ENSP00000264021.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264021.8Link to Ensembl Protein Viewer:ENSP00000264021.3Re-query CCDS DB by Nucleotide ID:ENST00000264021Re-query CCDS DB by Protein ID:ENSP00000264021
Original member Current member NCBI NM_001168618.2 NP_001162089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168618.2Link to Protein Sequence:NP_001162089.1Re-query CCDS DB by Nucleotide ID:NM_001168618Re-query CCDS DB by Protein ID:NP_001162089Link to BLAST:NP_001162089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162089.1 304 Q9NQC8-1 304 100% 0 0

Chromosomal Locations for CCDS 53718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118544916 118545011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118545409 118545494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118545793 118545853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118551786 118551852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118552214 118552335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118554459 118554587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118554990 118555083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118555248 118555322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118556906 118557045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118559785 118559829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGGCTGATAACAGCAGTGATGAGTGTGAAGAGGAAAATAACAAGGAGAAGAAGAAGACCTCACAGTTGA
CACCTCAACGGGGCTTTAGTGAAAATGAGGATGACGATGATGATGATGATGATTCATCTGAAACTGATTC
TGATTCTGATGATGATGATGAAGAGCATGGAGCCCCTCTGGAAGGGGCCTATGACCCTGCAGACTATGAG
CATTTGCCAGTTTCTGCTGAAATTAAGGAACTCTTCCAGTACATCAGTAGGTACACACCTCAGTTGATTG
ACCTGGACCACAAACTGAAGCCTTTCATTCCTGATTTTATCCCAGCTGTCGGGGATATTGATGCATTCTT
AAAGGTCCCACGTCCTGATGGAAAGCCTGACAACCTTGGCCTATTGGTATTGGATGAACCTTCTACAAAG
CAGTCAGACCCTACGGTGCTCTCACTCTGGTTAACAGAGAATTCTAAGCAGCACAACATCACACAACATA
TGAAAGTAAAAAGCCTAGAAGATGCAGAAAAGAATCCCAAAGCCATTGACACGTGGATTGAGAGCATCTC
TGAATTACACCGTTCTAAGCCCCCTGCGACTGTGCACTACACCAGGCCCATGCCCGACATTGACACGCTG
ATGCAGGAATGGTCCCCGGAGTTTGAAGAGCTTTTGGGCAAGGTAAGCCTGCCCACGGCAGAGATTGATT
GCAGCCTGGCAGAGTACATTGACATGATCTGTGCCATTCTAGACATCCCTGTCTACAAGAGTCGGATCCA
GTCCCTCCATCTGCTCTTTTCCCTCTACTCAGAATTCAAGAACTCACAGCATTTTAAAGCTCTCGCTGAA
GGCAAGAAAGCATTCACTCCTTCATCCAATTCCACCTCCCAAGCTGGAGACATGGAGACATTAACCTTCA
GCTGA

Translation (304 aa):
MADNSSDECEEENNKEKKKTSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE
HLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTK
QSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTL
MQEWSPEFEELLGKVSLPTAEIDCSLAEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAE
GKKAFTPSSNSTSQAGDMETLTFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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