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Report for CCDS3677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3677.1 Public Homo sapiens 4 SGMS2 24 110 108 CCDS HistoryNCBI Gene:166929Re-query CCDS DB by CCDS ID:3677.1Re-query CCDS DB by GeneID:166929See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359079.8 ENSP00000351981.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359079.8Link to Ensembl Protein Viewer:ENSP00000351981.4Re-query CCDS DB by Nucleotide ID:ENST00000359079Re-query CCDS DB by Protein ID:ENSP00000351981
Original member Current member EBI ENST00000394684.8 ENSP00000378176.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394684.8Link to Ensembl Protein Viewer:ENSP00000378176.4Re-query CCDS DB by Nucleotide ID:ENST00000394684Re-query CCDS DB by Protein ID:ENSP00000378176
Original member Current member EBI ENST00000394686.3 ENSP00000378178.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394686.3Link to Ensembl Protein Viewer:ENSP00000378178.3Re-query CCDS DB by Nucleotide ID:ENST00000394686Re-query CCDS DB by Protein ID:ENSP00000378178
Original member Current member EBI ENST00000690982.1 ENSP00000508566.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000690982.1Link to Ensembl Protein Viewer:ENSP00000508566.1Re-query CCDS DB by Nucleotide ID:ENST00000690982Re-query CCDS DB by Protein ID:ENSP00000508566
Original member Current member NCBI NM_001136257.2 NP_001129729.1 Accepted alive Link to Nucleotide Sequence:NM_001136257.2Link to Protein Sequence:NP_001129729.1Re-query CCDS DB by Nucleotide ID:NM_001136257Re-query CCDS DB by Protein ID:NP_001129729Link to BLAST:NP_001129729.1
Original member Current member NCBI NM_001136258.2 NP_001129730.1 Accepted alive Link to Nucleotide Sequence:NM_001136258.2Link to Protein Sequence:NP_001129730.1Re-query CCDS DB by Nucleotide ID:NM_001136258Re-query CCDS DB by Protein ID:NP_001129730Link to BLAST:NP_001129730.1
Original member Current member NCBI NM_001375905.1 NP_001362834.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375905.1Link to Protein Sequence:NP_001362834.1Re-query CCDS DB by Nucleotide ID:NM_001375905Re-query CCDS DB by Protein ID:NP_001362834Link to BLAST:NP_001362834.1
Original member Current member NCBI NM_001375906.1 NP_001362835.1 Accepted alive Link to Nucleotide Sequence:NM_001375906.1Link to Protein Sequence:NP_001362835.1Re-query CCDS DB by Nucleotide ID:NM_001375906Re-query CCDS DB by Protein ID:NP_001362835Link to BLAST:NP_001362835.1
Original member Current member NCBI NM_001375907.1 NP_001362836.1 Accepted alive Link to Nucleotide Sequence:NM_001375907.1Link to Protein Sequence:NP_001362836.1Re-query CCDS DB by Nucleotide ID:NM_001375907Re-query CCDS DB by Protein ID:NP_001362836Link to BLAST:NP_001362836.1
Original member Current member NCBI NM_001375908.1 NP_001362837.1 Accepted alive Link to Nucleotide Sequence:NM_001375908.1Link to Protein Sequence:NP_001362837.1Re-query CCDS DB by Nucleotide ID:NM_001375908Re-query CCDS DB by Protein ID:NP_001362837Link to BLAST:NP_001362837.1
Original member Current member NCBI NM_152621.6 NP_689834.1 Accepted alive Link to Nucleotide Sequence:NM_152621.6Link to Protein Sequence:NP_689834.1Re-query CCDS DB by Nucleotide ID:NM_152621Re-query CCDS DB by Protein ID:NP_689834Link to BLAST:NP_689834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129729.1 365 Q8NHU3 365 100% 0 0
NP_001129730.1 365 Q8NHU3 365 100% 0 0
NP_001362834.1 365 Q8NHU3 365 100% 0 0
NP_001362835.1 365 Q8NHU3 365 100% 0 0
NP_001362836.1 365 Q8NHU3 365 100% 0 0
NP_001362837.1 365 Q8NHU3 365 100% 0 0
NP_689834.1 365 Q8NHU3 365 100% 0 0

Chromosomal Locations for CCDS 3677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107895554 107896008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107899575 107899692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107903233 107903386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107908565 107908731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107910350 107910553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGATATCATAGAGACAGCAAAACTTGAAGAACATTTGGAAAATCAACCCAGTGATCCTACGAACACTT
ATGCAAGACCCGCTGAACCTGTTGAAGAAGAAAACAAAAATGGCAATGGTAAACCCAAGAGCTTATCCAG
TGGGCTGCGAAAAGGCACCAAAAAGTACCCGGACTATATCCAAATTGCTATGCCCACTGAATCAAGGAAC
AAATTTCCACTAGAGTGGTGGAAAACGGGCATTGCCTTCATATATGCAGTTTTCAACCTCGTCTTGACAA
CCGTCATGATCACAGTTGTACATGAGAGGGTCCCTCCCAAGGAGCTTAGCCCTCCACTCCCAGACAAGTT
TTTTGATTACATTGATAGGGTGAAATGGGCATTTTCTGTATCAGAAATAAATGGGATTATATTAGTTGGA
TTATGGATCACCCAGTGGCTGTTTCTGAGATACAAGTCAATAGTGGGACGCAGATTCTGTTTTATTATTG
GAACTTTATACCTGTATCGCTGCATTACAATGTATGTTACTACTCTACCTGTGCCTGGAATGCATTTCCA
GTGTGCTCCAAAGCTCAATGGAGACTCTCAGGCAAAAGTTCAACGGATTCTACGATTGATTTCTGGTGGT
GGATTGTCCATAACTGGATCACATATCTTATGTGGAGACTTCCTCTTCAGCGGTCACACGGTTACGCTGA
CACTGACTTATTTGTTCATCAAAGAATATTCGCCTCGTCACTTCTGGTGGTATCATTTAATCTGCTGGCT
GCTGAGTGCTGCCGGGATCATCTGCATTCTTGTAGCACACGAACACTACACTATCGATGTGATCATTGCT
TATTATATCACAACACGACTGTTTTGGTGGTACCATTCAATGGCCAATGAAAAGAACTTGAAGGTCTCTT
CACAGACTAATTTCTTATCTCGAGCATGGTGGTTCCCCATCTTTTATTTTTTTGAGAAAAATGTACAAGG
CTCAATTCCTTGCTGCTTCTCCTGGCCGCTGTCTTGGCCTCCTGGCTGCTTCAAATCATCATGCAAAAAG
TATTCACGGGTTCAGAAGATTGGTGAAGACAATGAGAAATCGACCTGA

Translation (365 aa):
MDIIETAKLEEHLENQPSDPTNTYARPAEPVEEENKNGNGKPKSLSSGLRKGTKKYPDYIQIAMPTESRN
KFPLEWWKTGIAFIYAVFNLVLTTVMITVVHERVPPKELSPPLPDKFFDYIDRVKWAFSVSEINGIILVG
LWITQWLFLRYKSIVGRRFCFIIGTLYLYRCITMYVTTLPVPGMHFQCAPKLNGDSQAKVQRILRLISGG
GLSITGSHILCGDFLFSGHTVTLTLTYLFIKEYSPRHFWWYHLICWLLSAAGIICILVAHEHYTIDVIIA
YYITTRLFWWYHSMANEKNLKVSSQTNFLSRAWWFPIFYFFEKNVQGSIPCCFSWPLSWPPGCFKSSCKK
YSRVQKIGEDNEKST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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