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Report for CCDS7544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7544.1 Public Homo sapiens 10 NT5C2 24 110 108 CCDS HistoryNCBI Gene:22978Re-query CCDS DB by CCDS ID:7544.1Re-query CCDS DB by GeneID:22978See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343289.9 ENSP00000339479.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343289.9Link to Ensembl Protein Viewer:ENSP00000339479.5Re-query CCDS DB by Nucleotide ID:ENST00000343289Re-query CCDS DB by Protein ID:ENSP00000339479
Original member Current member EBI ENST00000404739.8 ENSP00000383960.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404739.8Link to Ensembl Protein Viewer:ENSP00000383960.3Re-query CCDS DB by Nucleotide ID:ENST00000404739Re-query CCDS DB by Protein ID:ENSP00000383960
Original member Current member EBI ENST00000676428.1 ENSP00000501689.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676428.1Link to Ensembl Protein Viewer:ENSP00000501689.1Re-query CCDS DB by Nucleotide ID:ENST00000676428Re-query CCDS DB by Protein ID:ENSP00000501689
Original member Current member EBI ENST00000675326.1 ENSP00000502205.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675326.1Link to Ensembl Protein Viewer:ENSP00000502205.1Re-query CCDS DB by Nucleotide ID:ENST00000675326Re-query CCDS DB by Protein ID:ENSP00000502205
Original member Current member EBI ENST00000674696.1 ENSP00000502679.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674696.1Link to Ensembl Protein Viewer:ENSP00000502679.1Re-query CCDS DB by Nucleotide ID:ENST00000674696Re-query CCDS DB by Protein ID:ENSP00000502679
Original member Current member EBI ENST00000676449.1 ENSP00000502801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676449.1Link to Ensembl Protein Viewer:ENSP00000502801.1Re-query CCDS DB by Nucleotide ID:ENST00000676449Re-query CCDS DB by Protein ID:ENSP00000502801
Original member Current member NCBI NM_001134373.3 NP_001127845.1 Accepted alive Link to Nucleotide Sequence:NM_001134373.3Link to Protein Sequence:NP_001127845.1Re-query CCDS DB by Nucleotide ID:NM_001134373Re-query CCDS DB by Protein ID:NP_001127845Link to BLAST:NP_001127845.1
Original member Current member NCBI NM_001351169.2 NP_001338098.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351169.2Link to Protein Sequence:NP_001338098.1Re-query CCDS DB by Nucleotide ID:NM_001351169Re-query CCDS DB by Protein ID:NP_001338098Link to BLAST:NP_001338098.1
Original member Current member NCBI NM_012229.5 NP_036361.1 Accepted alive Link to Nucleotide Sequence:NM_012229.5Link to Protein Sequence:NP_036361.1Re-query CCDS DB by Nucleotide ID:NM_012229Re-query CCDS DB by Protein ID:NP_036361Link to BLAST:NP_036361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127845.1 561 P49902-1 561 100% 0 0
NP_001338098.1 561 P49902-1 561 100% 0 0
NP_036361.1 561 P49902-1 561 100% 0 0

Chromosomal Locations for CCDS 7544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103089672 103089908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103090611 103090787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103090936 103090996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103091564 103091615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103093139 103093309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103093972 103094038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103094348 103094455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103095939 103095980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103097291 103097374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103098931 103098984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103099926 103100019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103101045 103101102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103101235 103101326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103105706 103105801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103106589 103106706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103139406 103139479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103174858 103174958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGTCAACCTCCTGGAGTGATCGGTTACAGAATGCAGCAGATATGCCTGCTAACATGGATAAGCATGCCC
TGAAAAAGTATCGTCGAGAAGCCTATCATCGGGTGTTTGTGAACCGAAGTTTAGCAATGGAAAAGATAAA
GTGTTTTGGTTTTGATATGGATTATACCCTTGCTGTGTACAAGTCCCCAGAGTATGAGTCCCTTGGTTTT
GAGCTTACTGTGGAGAGATTAGTTTCTATTGGCTATCCCCAGGAGTTGCTCAGCTTTGCTTATGATTCTA
CATTCCCTACCAGGGGACTTGTCTTTGACACACTGTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAA
CCTCTTGGTCTGTGCACATGGATTTAACTTTATAAGGGGACCAGAAACTAGAGAACAGTATCCAAATAAA
TTTATCCAGCGAGATGATACTGAAAGATTTTACATTCTGAACACACTATTCAACCTACCAGAGACCTACC
TGTTGGCCTGCCTAGTAGATTTTTTTACTAATTGTCCCAGATATACCAGTTGTGAAACAGGATTTAAAGA
TGGGGACCTCTTCATGTCCTACCGGAGTATGTTCCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTAC
AAGGGCTCCCTTAAGGAAAAGACAGTTGAAAATCTTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTT
TGCTTCTGAGCCGGATGAAGGAAGTAGGGAAAGTATTTCTTGCTACCAACAGTGACTATAAATATACAGA
TAAAATTATGACTTACCTGTTTGACTTCCCACATGGCCCCAAGCCTGGGAGCTCCCATCGACCATGGCAG
TCCTACTTTGACTTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTACTGCGTC
AGGTGGATACTAAAACTGGCAAGCTGAAAATTGGTACCTACACAGGGCCCCTACAGCATGGTATCGTCTA
CTCAGGAGGTTCTTCTGATACGATCTGTGACCTGTTGGGAGCCAAGGGAAAAGACATTTTGTATATTGGA
GATCACATTTTTGGGGACATTTTAAAATCAAAGAAACGGCAAGGGTGGCGAACTTTTTTGGTGATTCCTG
AACTCGCACAGGAGCTACATGTCTGGACTGACAAGAGTTCACTTTTCGAAGAACTTCAGAGCTTGGATAT
TTTCTTGGCTGAACTCTACAAGCATCTTGACAGCAGTAGCAATGAGCGTCCAGACATCAGTTCCATCCAG
AGACGTATTAAGAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTTCGCAGTG
GCTCCCGGCAGACCCTTTTTGCCAGTCAAGTGATGCGTTATGCTGACCTCTATGCAGCATCTTTCATCAA
CCTGCTGTATTACCCTTTCAGCTACCTCTTCAGGGCTGCCCATGTCTTGATGCCTCATGAATCAACGGTG
GAGCACACACACGTAGATATCAATGAGATGGAGTCTCCTCTTGCCACCCGGAACCGCACATCAGTGGATT
TCAAAGACACTGACTACAAGCGGCACCAGCTGACACGGTCAATTAGTGAGATTAAACCTCCCAACCTCTT
CCCACTGGCCCCCCAGGAAATTACACACTGCCATGACGAAGATGATGATGAAGAGGAGGAGGAGGAGGAA
GAATAA

Translation (561 aa):
MSTSWSDRLQNAADMPANMDKHALKKYRREAYHRVFVNRSLAMEKIKCFGFDMDYTLAVYKSPEYESLGF
ELTVERLVSIGYPQELLSFAYDSTFPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNK
FIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHY
KGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGKVFLATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQ
SYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIG
DHIFGDILKSKKRQGWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQ
RRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQVMRYADLYAASFINLLYYPFSYLFRAAHVLMPHESTV
EHTHVDINEMESPLATRNRTSVDFKDTDYKRHQLTRSISEIKPPNLFPLAPQEITHCHDEDDDEEEEEEE
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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