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Report for CCDS46939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46939.1 Public Homo sapiens 3 PLCH1 24 110 108 CCDS HistoryNCBI Gene:23007Re-query CCDS DB by CCDS ID:46939.1Re-query CCDS DB by GeneID:23007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340059.11 ENSP00000345988.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340059.11Link to Ensembl Protein Viewer:ENSP00000345988.7Re-query CCDS DB by Nucleotide ID:ENST00000340059Re-query CCDS DB by Protein ID:ENSP00000345988
Original member Current member NCBI NM_001130960.2 NP_001124432.1 Accepted alive Link to Nucleotide Sequence:NM_001130960.2Link to Protein Sequence:NP_001124432.1Re-query CCDS DB by Nucleotide ID:NM_001130960Re-query CCDS DB by Protein ID:NP_001124432Link to BLAST:NP_001124432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124432.1 1693 Q4KWH8-1 1693 100% 0 0

Chromosomal Locations for CCDS 46939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155480968 155483051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155485356 155485710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155486147 155486206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155488028 155488107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155488660 155488806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155490784 155490868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155492729 155492853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155494141 155494248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155494338 155494517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155497320 155497417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155500703 155500794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155504555 155504626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155514723 155514884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155523897 155524004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155549787 155549958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155554076 155554196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155564915 155565118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155568231 155568324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155583472 155583642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155586065 155586194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155593941 155594184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155596232 155596378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155675997 155676039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5082 nt):
ATGGCAGACCTTGAAGTGTATAAAAACTTAAGTCCAGAAAAAGTTGAAAGATGCATGAGTGTGATGCAGT
CCGGGACACAGATGATCAAGCTGAAACGTGGAACCAAAGGGCTTGTCCGCCTCTTTTACCTGGATGAGCA
CCGGACACGCCTCCGATGGCGACCCTCTAGGAAGAGTGAGAAGGCAAAAATACTTATTGATTCCATTTAC
AAAGTGACTGAGGGCCGGCAGTCTGAAATATTCCACAGACAAGCTGAGGGGAACTTCGACCCCAGCTGCT
GCTTCACCATCTACCATGGCAACCACATGGAGTCCCTGGACCTCATCACCTCCAACCCCGAGGAGGCCCG
CACCTGGATCACAGGCCTCAAGTACCTGATGGCTGGCATCAGTGATGAAGACTCCCTTGCCAAAAGGCAG
AGGACCCATGACCAATGGGTGAAGCAGACCTTTGAGGAAGCTGATAAGAATGGTGACGGCTTGCTGAATA
TTGAAGAGATACATCAGCTGATGCATAAACTGAATGTTAATCTGCCCCGAAGAAAAGTCAGACAAATGTT
TCAGGAAGCCGACACAGATGAGAATCAGGGAACTTTGACATTTGAAGAGTTCTGTGTTTTTTACAAAATG
ATGTCTTTGAGACGAGACCTTTATTTGTTACTTTTGAGCTACAGTGACAAGAAAGATCACCTAACTGTGG
AAGAACTGGCTCAGTTTTTGAAGGTGGAGCAAAAGATGAATAATGTGACAACGGACTATTGTCTTGACAT
CATAAAGAAGTTTGAAGTTTCAGAAGAAAATAAGGTGAAAAATGTTCTTGGCATAGAAGGCTTCACGAAC
TTCATGCGTAGTCCTGCCTGTGACATATTTAACCCATTGCACCATGAAGTGTACCAAGACATGGATCAGC
CCCTCTGCAACTACTACATTGCTTCCTCTCACAATACATACCTGACTGGAGACCAGCTCCTTTCTCAGTC
CAAAGTGGATATGTATGCACGGGTGCTGCAAGAGGGCTGTCGCTGTGTGGAAGTTGACTGTTGGGATGGC
CCAGATGGAGAGCCAGTAGTACATCATGGTTACACTCTCACTTCAAAAATTCTCTTCAGAGATGTTGTGG
AGACCATCAACAAGCATGCCTTTGTGAAGAATGAGTTTCCTGTTATATTGTCTATCGAGAATCACTGCAG
TATCCAGCAGCAAAGGAAGATTGCTCAGTACCTGAAAGGAATATTCGGAGACAAACTGGACCTGTCATCT
GTTGATACAGGGGAGTGCAAGCAGCTTCCAAGCCCTCAAAGTTTGAAAGGCAAAATTCTAGTGAAGGGTA
AGAAGTTGCCTTATCACCTTGGGGATGATGCAGAGGAAGGGGAAGTTTCTGATGAGGACAGTGCAGATGA
AATTGAAGACGAGTGCAAATTCAAGCTCCATTATAGTAATGGGACCACTGAGCATCAGGTGGAATCTTTC
ATAAGGAAAAAACTGGAGTCACTGTTAAAAGAATCTCAAATTCGAGATAAAGAAGATCCTGATAGTTTCA
CAGTGCGGGCACTACTGAAGGCCACGCATGAAGGCTTAAATGCACACCTGAAGCAGAGTCCAGATGTAAA
GGAAAGTGGAAAGAAATCACATGGACGATCCCTCATGACCAACTTTGGAAAACATAAGAAAACTACAAAA
TCACGGTCTAAATCTTACAGTACTGATGATGAGGAAGACACACAGCAGAGTACTGGCAAGGAGGGTGGCC
AGCTGTACAGATTGGGTCGCCGAAGGAAAACCATGAAGCTCTGCCGAGAACTCTCTGATTTGGTTGTGTA
CACAAACTCCGTGGCCGCTCAGGACATTGTGGATGACGGAACCACAGGAAATGTGTTATCATTCAGTGAA
ACAAGAGCACATCAGGTTGTTCAGCAAAAATCAGAGCAGTTCATGATTTATAATCAAAAGCAACTCACGA
GGATTTACCCCTCTGCCTACCGCATTGATTCCAGTAACTTCAACCCTCTCCCCTACTGGAACGCAGGCTG
CCAGCTAGTGGCACTGAATTATCAATCTGAAGGACGAATGATGCAGTTAAACCGAGCCAAATTCAAGGCA
AATGGCAATTGTGGCTATGTCCTCAAACCCCAGCAAATGTGCAAAGGTACTTTCAACCCTTTCTCTGGTG
ACCCTCTTCCTGCCAACCCCAAAAAGCAGCTCATCCTGAAAGTTATCAGTGGACAGCAACTCCCCAAACC
TCCAGACTCCATGTTTGGAGATCGAGGCGAGATCATTGACCCTTTTGTTGAAGTTGAAATTATTGGATTG
CCAGTAGATTGTTGTAAAGATCAAACCCGTGTGGTAGATGACAATGGATTTAACCCTGTGTGGGAAGAAA
CACTGACATTTACAGTACACATGCCAGAAATAGCTTTGGTTCGGTTCCTTGTGTGGGATCACGATCCCAT
TGGACGAGACTTTGTTGGACAAAGAACTGTGACCTTCAGCAGCTTAGTGCCTGGCTACCGGCATGTCTAT
TTGGAAGGACTGACAGAAGCATCCATATTTGTACACATAACCATCAATGAAATCTATGGAAAGTGGAGCC
CTTTAATACTCAACCCCAGTTATACTATATTGCACTTTCTAGGAGCTACAAAGAACAGACAACTCCAGGG
TCTGAAGGGACTGTTCAATAAGAATCCTAGGCACAGTTCTTCAGAAAACAATTCCCATTATGTACGGAAG
CGATCCATTGGAGATAGAATTCTGCGACGCACAGCTAGCGCCCCAGCCAAAGGCAGGAAAAAGAGCAAAA
TGGGCTTCCAAGAAATGGTGGAGATAAAGGATTCTGTGTCCGAGGCCACAAGAGATCAAGATGGCGTGCT
GAGGAGGACCACACGCAGTTTGCAAGCACGCCCTGTCTCTATGCCTGTTGACAGAAACCTTCTGGGAGCT
TTGTCGCTGCCTGTATCTGAAACAGCAAAAGACATTGAAGGAAAAGAAAACTCTCTAGCAGAAGATAAAG
ATGGCAGAAGAAAAGGGAAAGCAAGTATAAAAGATCCACATTTTCTAAATTTCAACAAAAAGTTATCATC
CTCCTCCAGTGCTCTGCTCCACAAAGATACCAGCCAAGGGGACACCATTGTATCTACTGCCCACATGTCA
GTCACAGGAGAACAGCTGGGCATGTCAAGTCCTAGGGGTGGGAGAACCACATCAAATGCCACAAGCAATT
GCCAGGAAAACCCCTGTCCCAGCAAGTCTCTCTCCCCAAAGCAGCATTTGGCTCCCGATCCTGTAGTTAA
CCCCACACAAGATCTGCATGGTGTGAAAATCAAGGAAAAGGGTAATCCTGAGGACTTTGTGGAAGGGAAA
AGCATCTTGTCAGGAAGCGTCCTTTCTCATAGCAACCTAGAAATTAAGAACCTGGAAGGTAATAGGGGTA
AGGGCCGAGCTGCAACATCCTTTTCTTTGTCAGACGTCTCCATGCTCTGTTCTGACATACCTGACCTACA
TTCAACTGCAATTCTGCAGGAGAGTGTAATTTCCCATCTTATTGACAATGTCACTTTAACAAATGAGAAT
GAGCCGGGCAGTTCCATCTCAGCCCTGATTGGCCAGTTTGATGAGACCAACAATCAGGCTCTCACAGTTG
TTTCTCATCTTCATAATACCAGTGTGATGTCAGGCCATTGTCCCTTGCCTAGCCTGGGCCTAAAAATGCC
CATCAAGCATGGTTTTTGCAAGGGAAAATCCAAGTCTTCCTTCCTGTGCTCATCTCCGGAGCTGATAGCA
CTCTCGAGTTCTGAGACCACCAAACATGCAACGAACACAGTTTATGAAACTACCTGCACTCCCATCTCTA
AAACCAAACCAGATGATGACCTTTCTAGTAAGGCCAAGACAGCGGCCTTAGAAAGCAACCTGCCTGGATC
CCCTAATACTTCTCGTGGCTGGTTACCAAAAAGTCCTACCAAGGGAGAAGACTGGGAAACACTGAAGAGC
TGCAGCCCTGCCTCTTCCCCTGATTTGACCCTGGAGGATGTAATAGCTGATCCCACTCTCTGTTTCAATT
CTGGGGAGAGCAGCCTTGTGGAAATTGATGGAGAATCAGAAAATCTTTCTCTAACAACCTGTGAATATAG
GAGAGAGGGCACAAGTCAACTTGCTTCTCCTTTAAAACTCAAGTACAATCAGGGTGTGGTAGAACACTTT
CAAAGAGGTTTGAGAAACGGCTACTGTAAAGAGACCCTCCGCCCTTCTGTCCCTGAAATATTCAACAATA
TTCAAGATGTCAAAACTCAAAGTATTTCTTATCTAGCCTATCAGGGTGCTGGCTTTGTGCATAATCATTT
CTCAGATTCAGATGCAAAAATGTTCCAGACCTGTGTGCCCCAGCAATCTAGTGCTCAAGATATGCATGTC
CCTGTACCCAAGCAGTTGGCACATCTTCCTTTGCCTGCTCTGAAACTGCCTAGTCCTTGCAAATCCAAAA
GTCTGGGGGACTTAACATCAGAGGACATTGCCTGCAATTTTGAGAGCAAGTACCAGTGTATTAGTAAGAG
TTTTGTTACAACTGGCATTAGAGACAAGAAGGGCGTGACTGTGAAGACAAAGTCGTTAGAGCCTATAGAT
GCCCTGACCGAGCAGCTTCGGAAGCTTGTGTCCTTTGACCAGGAAGACAACTGCCAAGTGCTATATTCAA
AGCAGGATGCCAATCAGCTCCCCCGGGCACTGGTCAGGAAGTTGTCATCCAGAAGTCAGAGCAGAGTGCG
CAATATTGCTAGTCGTGCCAAGGAGAAACAGGAAGCCAACAAGCAGAAAGTTCCAAACCCCAGCAATGGG
GCAGGAGTGGTTCTTAGAAACAAACCCTCAGCACCCACCCCTGCAGTGAATCGCCACTCCACCGGCTCCT
ACATCGCAGGCTACCTGAAGAACACGAAAGGGGGTGGCCTTGAAGGCCGGGGCATCCCAGAGGGGGCATG
CACGGCTCTTCACTATGGCCACGTTGACCAGTTTTGTTCAGATAATTCTGTTTTGCAGACTGAGCCAAGC
AGTGATGATAAACCAGAAATTTATTTTCTTTTGAGACTGTGA

Translation (1693 aa):
MADLEVYKNLSPEKVERCMSVMQSGTQMIKLKRGTKGLVRLFYLDEHRTRLRWRPSRKSEKAKILIDSIY
KVTEGRQSEIFHRQAEGNFDPSCCFTIYHGNHMESLDLITSNPEEARTWITGLKYLMAGISDEDSLAKRQ
RTHDQWVKQTFEEADKNGDGLLNIEEIHQLMHKLNVNLPRRKVRQMFQEADTDENQGTLTFEEFCVFYKM
MSLRRDLYLLLLSYSDKKDHLTVEELAQFLKVEQKMNNVTTDYCLDIIKKFEVSEENKVKNVLGIEGFTN
FMRSPACDIFNPLHHEVYQDMDQPLCNYYIASSHNTYLTGDQLLSQSKVDMYARVLQEGCRCVEVDCWDG
PDGEPVVHHGYTLTSKILFRDVVETINKHAFVKNEFPVILSIENHCSIQQQRKIAQYLKGIFGDKLDLSS
VDTGECKQLPSPQSLKGKILVKGKKLPYHLGDDAEEGEVSDEDSADEIEDECKFKLHYSNGTTEHQVESF
IRKKLESLLKESQIRDKEDPDSFTVRALLKATHEGLNAHLKQSPDVKESGKKSHGRSLMTNFGKHKKTTK
SRSKSYSTDDEEDTQQSTGKEGGQLYRLGRRRKTMKLCRELSDLVVYTNSVAAQDIVDDGTTGNVLSFSE
TRAHQVVQQKSEQFMIYNQKQLTRIYPSAYRIDSSNFNPLPYWNAGCQLVALNYQSEGRMMQLNRAKFKA
NGNCGYVLKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQLPKPPDSMFGDRGEIIDPFVEVEIIGL
PVDCCKDQTRVVDDNGFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDFVGQRTVTFSSLVPGYRHVY
LEGLTEASIFVHITINEIYGKWSPLILNPSYTILHFLGATKNRQLQGLKGLFNKNPRHSSSENNSHYVRK
RSIGDRILRRTASAPAKGRKKSKMGFQEMVEIKDSVSEATRDQDGVLRRTTRSLQARPVSMPVDRNLLGA
LSLPVSETAKDIEGKENSLAEDKDGRRKGKASIKDPHFLNFNKKLSSSSSALLHKDTSQGDTIVSTAHMS
VTGEQLGMSSPRGGRTTSNATSNCQENPCPSKSLSPKQHLAPDPVVNPTQDLHGVKIKEKGNPEDFVEGK
SILSGSVLSHSNLEIKNLEGNRGKGRAATSFSLSDVSMLCSDIPDLHSTAILQESVISHLIDNVTLTNEN
EPGSSISALIGQFDETNNQALTVVSHLHNTSVMSGHCPLPSLGLKMPIKHGFCKGKSKSSFLCSSPELIA
LSSSETTKHATNTVYETTCTPISKTKPDDDLSSKAKTAALESNLPGSPNTSRGWLPKSPTKGEDWETLKS
CSPASSPDLTLEDVIADPTLCFNSGESSLVEIDGESENLSLTTCEYRREGTSQLASPLKLKYNQGVVEHF
QRGLRNGYCKETLRPSVPEIFNNIQDVKTQSISYLAYQGAGFVHNHFSDSDAKMFQTCVPQQSSAQDMHV
PVPKQLAHLPLPALKLPSPCKSKSLGDLTSEDIACNFESKYQCISKSFVTTGIRDKKGVTVKTKSLEPID
ALTEQLRKLVSFDQEDNCQVLYSKQDANQLPRALVRKLSSRSQSRVRNIASRAKEKQEANKQKVPNPSNG
AGVVLRNKPSAPTPAVNRHSTGSYIAGYLKNTKGGGLEGRGIPEGACTALHYGHVDQFCSDNSVLQTEPS
SDDKPEIYFLLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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