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Report for CCDS42490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42490.1 Public Homo sapiens 19 TRAPPC5 24 110 108 CCDS HistoryNCBI Gene:126003Re-query CCDS DB by CCDS ID:42490.1Re-query CCDS DB by GeneID:126003See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317378.5 ENSP00000316990.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317378.5Link to Ensembl Protein Viewer:ENSP00000316990.4Re-query CCDS DB by Nucleotide ID:ENST00000317378Re-query CCDS DB by Protein ID:ENSP00000316990
Original member Current member EBI ENST00000426877.2 ENSP00000399025.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426877.2Link to Ensembl Protein Viewer:ENSP00000399025.1Re-query CCDS DB by Nucleotide ID:ENST00000426877Re-query CCDS DB by Protein ID:ENSP00000399025
Original member Current member EBI ENST00000596148.3 ENSP00000470262.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000596148.3Link to Ensembl Protein Viewer:ENSP00000470262.1Re-query CCDS DB by Nucleotide ID:ENST00000596148Re-query CCDS DB by Protein ID:ENSP00000470262
Original member Current member NCBI NM_001042461.3 NP_001035926.1 Accepted alive Link to Nucleotide Sequence:NM_001042461.3Link to Protein Sequence:NP_001035926.1Re-query CCDS DB by Nucleotide ID:NM_001042461Re-query CCDS DB by Protein ID:NP_001035926Link to BLAST:NP_001035926.1
Original member Current member NCBI NM_001042462.2 NP_001035927.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042462.2Link to Protein Sequence:NP_001035927.1Re-query CCDS DB by Nucleotide ID:NM_001042462Re-query CCDS DB by Protein ID:NP_001035927Link to BLAST:NP_001035927.1
Original member Current member NCBI NM_174894.3 NP_777554.1 Accepted alive Link to Nucleotide Sequence:NM_174894.3Link to Protein Sequence:NP_777554.1Re-query CCDS DB by Nucleotide ID:NM_174894Re-query CCDS DB by Protein ID:NP_777554Link to BLAST:NP_777554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035926.1 188 Q8IUR0 188 100% 0 0
NP_001035927.1 188 Q8IUR0 188 100% 0 0
NP_777554.1 188 Q8IUR0 188 100% 0 0

Chromosomal Locations for CCDS 42490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7682254 7682820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGAGGCGCGCTTCACGCGCGGGAAGTCGGCGCTGCTGGAGCGCGCGCTGGCGCGGCCGCGCACCGAGG
TGAGCCTGAGCGCCTTCGCACTGCTGTTCTCCGAGCTGGTACAGCACTGCCAGAGCCGCGTCTTCTCCGT
GGCCGAGCTGCAGTCGCGCCTGGCCGCGCTGGGCCGCCAGGTGGGCGCGCGCGTGCTGGATGCGCTGGTG
GCGCGCGAAAAGGGTGCCCGGCGTGAGACCAAGGTGCTAGGCGCGTTGCTCTTCGTCAAGGGCGCCGTGT
GGAAGGCGCTCTTCGGCAAGGAGGCGGACAAGCTGGAGCAGGCCAACGATGACGCGCGCACCTTCTACAT
CATCGAGCGCGAGCCGCTCATCAACACCTACATCTCCGTGCCCAAGGAGAACAGCACGCTCAACTGCGCC
AGCTTCACGGCGGGCATCGTGGAGGCGGTGCTCACACACAGCGGCTTCCCTGCCAAGGTCACGGCGCACT
GGCACAAGGGCACCACGCTCATGATCAAGTTCGAGGAGGCAGTCATCGCTCGAGACCGGGCCCTGGAGGG
CCGCTGA

Translation (188 aa):
MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALV
AREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCA
SFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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