NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6292.1 Public Homo sapiens 8 NCALD 24 110 108 CCDS HistoryNCBI Gene:83988Re-query CCDS DB by CCDS ID:6292.1Re-query CCDS DB by GeneID:83988See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6292.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220931.11 ENSP00000220931.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220931.11Link to Ensembl Protein Viewer:ENSP00000220931.6Re-query CCDS DB by Nucleotide ID:ENST00000220931Re-query CCDS DB by Protein ID:ENSP00000220931
Original member Current member EBI ENST00000311028.4 ENSP00000310587.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311028.4Link to Ensembl Protein Viewer:ENSP00000310587.3Re-query CCDS DB by Nucleotide ID:ENST00000311028Re-query CCDS DB by Protein ID:ENSP00000310587
Original member Current member EBI ENST00000395923.5 ENSP00000379256.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395923.5Link to Ensembl Protein Viewer:ENSP00000379256.1Re-query CCDS DB by Nucleotide ID:ENST00000395923Re-query CCDS DB by Protein ID:ENSP00000379256
Original member Current member EBI ENST00000521599.5 ENSP00000428105.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521599.5Link to Ensembl Protein Viewer:ENSP00000428105.1Re-query CCDS DB by Nucleotide ID:ENST00000521599Re-query CCDS DB by Protein ID:ENSP00000428105
Original member Current member EBI ENST00000519508.6 ENSP00000430476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519508.6Link to Ensembl Protein Viewer:ENSP00000430476.1Re-query CCDS DB by Nucleotide ID:ENST00000519508Re-query CCDS DB by Protein ID:ENSP00000430476
Original member Current member NCBI NM_001040624.2 NP_001035714.1 Accepted alive Link to Nucleotide Sequence:NM_001040624.2Link to Protein Sequence:NP_001035714.1Re-query CCDS DB by Nucleotide ID:NM_001040624Re-query CCDS DB by Protein ID:NP_001035714Link to BLAST:NP_001035714.1
Original member Current member NCBI NM_001040625.2 NP_001035715.1 Accepted alive Link to Nucleotide Sequence:NM_001040625.2Link to Protein Sequence:NP_001035715.1Re-query CCDS DB by Nucleotide ID:NM_001040625Re-query CCDS DB by Protein ID:NP_001035715Link to BLAST:NP_001035715.1
Original member Current member NCBI NM_001040626.2 NP_001035716.1 Accepted alive Link to Nucleotide Sequence:NM_001040626.2Link to Protein Sequence:NP_001035716.1Re-query CCDS DB by Nucleotide ID:NM_001040626Re-query CCDS DB by Protein ID:NP_001035716Link to BLAST:NP_001035716.1
Original member Current member NCBI NM_001040627.2 NP_001035717.1 Accepted alive Link to Nucleotide Sequence:NM_001040627.2Link to Protein Sequence:NP_001035717.1Re-query CCDS DB by Nucleotide ID:NM_001040627Re-query CCDS DB by Protein ID:NP_001035717Link to BLAST:NP_001035717.1
Original member Current member NCBI NM_001040628.2 NP_001035718.1 Accepted alive Link to Nucleotide Sequence:NM_001040628.2Link to Protein Sequence:NP_001035718.1Re-query CCDS DB by Nucleotide ID:NM_001040628Re-query CCDS DB by Protein ID:NP_001035718Link to BLAST:NP_001035718.1
Original member Current member NCBI NM_001040629.2 NP_001035719.1 Accepted alive Link to Nucleotide Sequence:NM_001040629.2Link to Protein Sequence:NP_001035719.1Re-query CCDS DB by Nucleotide ID:NM_001040629Re-query CCDS DB by Protein ID:NP_001035719Link to BLAST:NP_001035719.1
Original member Current member NCBI NM_001040630.2 NP_001035720.1 Accepted alive Link to Nucleotide Sequence:NM_001040630.2Link to Protein Sequence:NP_001035720.1Re-query CCDS DB by Nucleotide ID:NM_001040630Re-query CCDS DB by Protein ID:NP_001035720Link to BLAST:NP_001035720.1
Original member Current member NCBI NM_032041.3 NP_114430.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032041.3Link to Protein Sequence:NP_114430.2Re-query CCDS DB by Nucleotide ID:NM_032041Re-query CCDS DB by Protein ID:NP_114430Link to BLAST:NP_114430.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035714.1 193 P61601 193 100% 0 0
NP_001035715.1 193 P61601 193 100% 0 0
NP_001035716.1 193 P61601 193 100% 0 0
NP_001035717.1 193 P61601 193 100% 0 0
NP_001035718.1 193 P61601 193 100% 0 0
NP_001035719.1 193 P61601 193 100% 0 0
NP_001035720.1 193 P61601 193 100% 0 0
NP_114430.2 193 P61601 193 100% 0 0

Chromosomal Locations for CCDS 6292.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 101689309 101689406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 101692791 101692896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 101719252 101719629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGGAAACAGAACAGCAAGCTGCGCCCGGAGGTCATGCAGGACTTGCTGGAAAGCACAGACTTTACAG
AGCATGAGATCCAGGAATGGTATAAAGGCTTCTTGAGAGACTGCCCCAGTGGACATTTGTCAATGGAAGA
GTTTAAGAAAATATATGGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTTGCAGAGCATGTCTTCCGC
ACCTTCGATGCAAATGGAGATGGGACAATAGACTTTAGAGAATTCATCATCGCCTTGAGTGTAACTTCGA
GGGGGAAGCTGGAGCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGAAATGGCTATATCAG
CAAGGCAGAGATGCTAGAGATCGTGCAGGCAATCTATAAGATGGTTTCCTCTGTAATGAAAATGCCTGAA
GATGAGTCAACCCCAGAGAAAAGAACAGAAAAGATCTTCCGCCAGATGGACACCAATAGAGACGGAAAAC
TCTCCCTGGAAGAGTTCATCCGAGGAGCCAAAAGCGACCCGTCCATTGTGCGCCTCCTGCAGTGCGACCC
GAGCAGTGCCGGCCAGTTCTGA

Translation (193 aa):
MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFR
TFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPE
DESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH