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Report for CCDS16034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16034.1 Public Mus musculus 2 Cacnb4 23 108 98 CCDS HistoryNCBI Gene:12298Re-query CCDS DB by CCDS ID:16034.1Re-query CCDS DB by GeneID:12298See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078324.6 ENSMUSP00000077438.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078324.6Link to Ensembl Protein Viewer:ENSMUSP00000077438.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078324Re-query CCDS DB by Protein ID:ENSMUSP00000077438
Original member NCBI NM_001037099.2 NP_001032176.1 Updated not alive Link to Nucleotide Sequence:NM_001037099.2Link to Protein Sequence:NP_001032176.1Re-query CCDS DB by Nucleotide ID:NM_001037099Re-query CCDS DB by Protein ID:NP_001032176
Current member NCBI NM_001037099.3 NP_001032176.1 Accepted alive Link to Nucleotide Sequence:NM_001037099.3Link to Protein Sequence:NP_001032176.1Re-query CCDS DB by Nucleotide ID:NM_001037099Re-query CCDS DB by Protein ID:NP_001032176Link to BLAST:NP_001032176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032176.1 519 Q8R0S4-3 519 100% 0 0

Chromosomal Locations for CCDS 16034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52434489 52434749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52436886 52437071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52449950 52450045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52451869 52452020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52455600 52455709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52464610 52464668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465598 52465678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465894 52465913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52467244 52467320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52469477 52469607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52474863 52474985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52477692 52477811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52675728 52675811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52676271 52676330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGTCGTCCTCGTACGGCAAGAACGGGGCGGCGGACGGGCCGCACTCCCCCAGCTCACAGGTGGCCCGAG
GCACCACGACCCGGAGGAGCAGGTTGAAAAGATCGGATGGCAGCACCACTTCTACCAGCTTCATCCTCAG
ACAGGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCCTTGGAAGAGGACCGGGAA
GCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTT
TTGCGGTGAAAACGAACGTGAGCTACTGTGGTGCCCTGGACGAAGATGTGCCCGTTCCCAGCACAGCCAT
CTCCTTTGACGCCAAGGACTTTCTTCACATTAAAGAGAAATATAACAATGATTGGTGGATAGGAAGACTG
GTAAAAGAGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAATATTCGGATTCAACAGG
AACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGT
ATCAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCACATTCCT
CCGTATGACGTCGTGCCGTCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAGGTAA
CAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAGGATATCAATAACAAG
AGTGACAGCTGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAA
CGTTCCAACACCAGATCCAGCTTAGCGGAAGTACAAAGTGAAATTGAAAGAATTTTTGAGTTGGCAAGAT
CTTTGCAATTGGTTGTTCTTGATGCAGACACCATCAACCACCCAGCACAGCTGATAAAGACATCCTTAGC
ACCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAGGTTTTACAGCGGCTGATTAAGTCCAGAGGAAAG
TCCCAAAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGATAAACTGGCCCAGTGCCCGCCTGAAATGT
TTGATGTTATATTAGATGAGAATCAACTTGAGGATGCCTGTGAACATCTGGGAGAGTACCTGGAGGCATA
CTGGCGTGCCACCCACACGAGCAGTAGCACCCCTATGACCCCATTACTGGGGCGGAACGTGGGCTCCACA
GCCCTCTCACCATATCCCACAGCAATCTCTGGATTACAGAGTCAGCGAATGAGACACAGCAACCATTCTA
CAGAGAATTCTCCAATTGAAAGACGAAGCCTAATGACCTCGGATGAAAATTACCACAATGAGAGGGCCCG
CAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCACTACCCTCTGGTGGAAGAAGAT
TACCCGGACTCGTACCAGGACACTTATAAGCCCCATAGGAACCGAGGATCGCCCGGGGGGTGCAGCCATG
ACTCCCGACATAGGCTTTGA

Translation (519 aa):
MSSSYGKNGAADGPHSPSSQVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDRE
AIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRL
VKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHIP
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIE
RSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGK
SQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGST
ALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEED
YPDSYQDTYKPHRNRGSPGGCSHDSRHRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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