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Report for CCDS8835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8835.1 Public Homo sapiens 12 KRT2 24 110 108 CCDS HistoryNCBI Gene:3849Re-query CCDS DB by CCDS ID:8835.1Re-query CCDS DB by GeneID:3849See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309680.4 ENSP00000310861.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309680.4Link to Ensembl Protein Viewer:ENSP00000310861.3Re-query CCDS DB by Nucleotide ID:ENST00000309680Re-query CCDS DB by Protein ID:ENSP00000310861
Original member Current member NCBI NM_000423.3 NP_000414.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000423.3Link to Protein Sequence:NP_000414.2Re-query CCDS DB by Nucleotide ID:NM_000423Re-query CCDS DB by Protein ID:NP_000414Link to BLAST:NP_000414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000414.2 639 P35908 639 100% 0 0

Chromosomal Locations for CCDS 8835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52645019 52645434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52645535 52645569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52646740 52646960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52647730 52647855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52648173 52648337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52649007 52649102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52649914 52649974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52650339 52650553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52651558 52652142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGAGTTGTCAGATCTCTTGCAAATCTCGAGGAAGAGGAGGAGGTGGAGGAGGATTCCGGGGCTTCAGCA
GCGGCTCAGCTGTGGTGTCTGGTGGAAGCCGGAGATCAACTTCCAGCTTCTCCTGCTTGAGCCGCCATGG
TGGTGGTGGCGGGGGCTTCGGTGGAGGCGGCTTTGGCAGTCGGAGTCTTGTTGGCCTTGGAGGGACCAAG
AGCATCTCCATTAGTGTGGCTGGAGGAGGTGGTGGCTTTGGCGCCGCTGGTGGATTTGGTGGCAGAGGAG
GTGGTTTTGGAGGCGGCAGCAGCTTTGGAGGTGGCAGCGGCTTCAGTGGTGGTGGTTTCGGTGGAGGCGG
CTTTGGTGGAGGCCGCTTTGGAGGTTTTGGGGGCCCTGGTGGTGTTGGAGGTTTAGGGGGTCCTGGTGGC
TTTGGGCCTGGAGGATACCCTGGTGGCATCCACGAAGTCTCTGTCAACCAGAGCCTCCTGCAGCCTCTCA
ACGTGAAAGTTGACCCAGAGATCCAGAATGTGAAGGCCCAAGAGCGTGAGCAGATCAAAACTCTCAACAA
CAAATTTGCCTCCTTCATTGACAAGGTGCGGTTCTTGGAGCAGCAGAACCAGGTGTTACAGACCAAATGG
GAGCTGCTACAACAAATGAATGTTGGCACCCGCCCCATCAACCTGGAGCCCATCTTCCAGGGGTATATCG
ACAGCCTCAAGAGATATCTGGATGGGCTCACTGCAGAAAGAACATCACAGAATTCAGAGCTGAATAACAT
GCAGGATCTTGTGGAGGATTATAAGAAGAAGTATGAGGATGAAATCAATAAGCGCACAGCTGCTGAGAAT
GATTTTGTGACGCTTAAAAAGGACGTGGACAATGCCTACATGATAAAGGTGGAGTTGCAGTCCAAGGTGG
ACCTGCTGAACCAGGAAATTGAGTTTCTGAAAGTTCTCTATGATGCGGAGATATCCCAGATACATCAGAG
TGTCACTGACACCAACGTCATCCTCTCCATGGACAACAGCCGCAACCTGGACTTGGATAGCATCATCGCC
GAGGTCAAGGCCCAGTATGAGGAGATCGCCCAGAGGAGCAAGGAAGAAGCGGAGGCCCTGTACCACAGCA
AGTATGAGGAGCTCCAGGTGACTGTCGGGAGACATGGAGACAGCCTGAAAGAGATCAAGATAGAGATCAG
CGAGCTGAACCGCGTGATCCAGAGGCTGCAGGGGGAGATCGCACATGTGAAGAAGCAGTGTAAGAATGTG
CAAGATGCCATCGCAGATGCCGAGCAGCGTGGGGAGCATGCCCTCAAGGATGCCAGGAACAAGTTGAATG
ACCTGGAGGAGGCCCTGCAGCAGGCCAAGGAGGACTTGGCGCGGCTGCTGCGTGACTACCAGGAGCTGAT
GAACGTGAAGCTGGCCCTAGATGTGGAGATCGCCACCTACCGCAAACTGCTGGAGGGCGAGGAGTGCAGG
ATGTCTGGAGACCTCAGCAGCAATGTGACTGTGTCTGTGACAAGCAGCACCATTTCATCAAATGTGGCAT
CCAAGGCTGCCTTTGGAGGTTCTGGAGGTAGAGGGTCCAGTTCCGGAGGAGGATACAGCTCTGGAAGCAG
CAGTTATGGCTCTGGAGGCCGACAGTCTGGCTCCAGAGGCGGTAGTGGAGGAGGAGGTTCTATCTCTGGA
GGAGGATATGGCTCTGGCGGTGGTTCTGGAGGAAGATACGGATCTGGTGGTGGCTCTAAGGGAGGGTCCA
TCTCTGGAGGAGGATATGGCTCTGGAGGTGGAAAACACAGCTCTGGAGGTGGCTCTAGAGGAGGCTCCAG
CTCTGGAGGAGGATATGGCTCTGGAGGTGGGGGTTCTAGCTCTGTAAAGGGTAGCTCAGGTGAAGCTTTT
GGTTCCAGCGTGACCTTCTCTTTTAGATAA

Translation (639 aa):
MSCQISCKSRGRGGGGGGFRGFSSGSAVVSGGSRRSTSSFSCLSRHGGGGGGFGGGGFGSRSLVGLGGTK
SISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGGPGG
FGPGGYPGGIHEVSVNQSLLQPLNVKVDPEIQNVKAQEREQIKTLNNKFASFIDKVRFLEQQNQVLQTKW
ELLQQMNVGTRPINLEPIFQGYIDSLKRYLDGLTAERTSQNSELNNMQDLVEDYKKKYEDEINKRTAAEN
DFVTLKKDVDNAYMIKVELQSKVDLLNQEIEFLKVLYDAEISQIHQSVTDTNVILSMDNSRNLDLDSIIA
EVKAQYEEIAQRSKEEAEALYHSKYEELQVTVGRHGDSLKEIKIEISELNRVIQRLQGEIAHVKKQCKNV
QDAIADAEQRGEHALKDARNKLNDLEEALQQAKEDLARLLRDYQELMNVKLALDVEIATYRKLLEGEECR
MSGDLSSNVTVSVTSSTISSNVASKAAFGGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISG
GGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVKGSSGEAF
GSSVTFSFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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