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Report for CCDS8359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8359.1 Public Homo sapiens 11 PTS 24 110 108 CCDS HistoryNCBI Gene:5805Re-query CCDS DB by CCDS ID:8359.1Re-query CCDS DB by GeneID:5805See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280362.8 ENSP00000280362.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280362.8Link to Ensembl Protein Viewer:ENSP00000280362.3Re-query CCDS DB by Nucleotide ID:ENST00000280362Re-query CCDS DB by Protein ID:ENSP00000280362
Original member Current member NCBI NM_000317.3 NP_000308.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000317.3Link to Protein Sequence:NP_000308.1Re-query CCDS DB by Nucleotide ID:NM_000317Re-query CCDS DB by Protein ID:NP_000308Link to BLAST:NP_000308.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000308.1 145 Q03393 145 100% 0 0

Chromosomal Locations for CCDS 8359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 112226444 112226526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112228594 112228673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112230208 112230230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112230626 112230682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112233163 112233233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112233432 112233555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGAGCACGGAAGGTGGTGGCCGTCGCTGCCAGGCACAAGTGTCCCGCCGCATCTCCTTCAGCGCGAGCC
ACCGATTGTACAGTAAATTTCTAAGTGATGAAGAAAACTTGAAACTGTTTGGGAAATGCAACAATCCAAA
TGGCCATGGGCACAATTATAAAGTTGTGGTGACAGTACATGGAGAGATTGACCCTGCTACGGGAATGGTT
ATGAATCTGGCTGATCTCAAAAAATATATGGAGGAGGCGATTATGCAGCCCCTTGATCATAAGAATCTGG
ATATGGATGTGCCATACTTTGCAGATGTGGTGAGCACGACTGAAAATGTAGCTGTTTATATCTGGGACAA
CCTCCAGAAAGTTCTTCCTGTAGGAGTTCTTTATAAAGTAAAAGTATACGAAACTGACAATAATATTGTG
GTTTATAAAGGAGAATAG

Translation (145 aa):
MSTEGGGRRCQAQVSRRISFSASHRLYSKFLSDEENLKLFGKCNNPNGHGHNYKVVVTVHGEIDPATGMV
MNLADLKKYMEEAIMQPLDHKNLDMDVPYFADVVSTTENVAVYIWDNLQKVLPVGVLYKVKVYETDNNIV
VYKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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