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Report for CCDS81885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81885.1 Public Homo sapiens 15 PYGO1 24 110 108 CCDS HistoryNCBI Gene:26108Re-query CCDS DB by CCDS ID:81885.1Re-query CCDS DB by GeneID:26108See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563719.4 ENSP00000457777.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000563719.4Link to Ensembl Protein Viewer:ENSP00000457777.1Re-query CCDS DB by Nucleotide ID:ENST00000563719Re-query CCDS DB by Protein ID:ENSP00000457777
Original member Current member EBI ENST00000645724.1 ENSP00000496139.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645724.1Link to Ensembl Protein Viewer:ENSP00000496139.1Re-query CCDS DB by Nucleotide ID:ENST00000645724Re-query CCDS DB by Protein ID:ENSP00000496139
Original member Current member NCBI NM_001330326.2 NP_001317255.1 Accepted alive Link to Nucleotide Sequence:NM_001330326.2Link to Protein Sequence:NP_001317255.1Re-query CCDS DB by Nucleotide ID:NM_001330326Re-query CCDS DB by Protein ID:NP_001317255Link to BLAST:NP_001317255.1
Original member Current member NCBI NM_001367806.1 NP_001354735.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367806.1Link to Protein Sequence:NP_001354735.1Re-query CCDS DB by Nucleotide ID:NM_001367806Re-query CCDS DB by Protein ID:NP_001354735Link to BLAST:NP_001354735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317255.1 419 Q9Y3Y4-2 419 100% 0 0
NP_001354735.1 419 Q9Y3Y4-2 419 100% 0 0

Chromosomal Locations for CCDS 81885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 55546023 55547147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55548910 55548995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 55587835 55587883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGTCAGCAGAACAGGAGAAGGATCCCATTTCGCTGAAGAGAGTTCGAGGTGGTGATAGTGGACTGGATG
GGTTAGGAGGACCAGGTGTACAACTAGGAAGCCCAGATAAGAAAAAGCGCAAGGCAAATACACAGGGACC
TTCTTTCCCTCCATTGTCTGAGTATGCTCCACCACCGAATCCAAACTCTGACCATCTAGTGGCTGCTAAT
CCATTTGATGACAACTATAATACTATTTCCTATAAACCACTACCTTCGTCAAATCCATATCTTGGCCCTG
GTTATCCTGGCTTTGGAGGCTATAGTACATTCAGAATGCCACCTCACGTTCCCCCAAGAATGTCTTCCCC
ATACTGTGGTCCTTACTCACTCAGGAACCAGCCACACCCATTTCCTCAGAATCCTCTGGGCATGGGTTTT
AATCGACCTCATGCTTTTAACTTTGGGCCACATGATAATTCAAGTTTCGGTAATCCATCTTATAATAATG
CACTAAGTCAGAATGTCAACATGCCTAATCAACATTTTAGACAAAATCCTGCTGAAAATTTCAGTCAAAT
TCCTCCACAGAATGCTAGCCAAGTTTCTAACCCCGATTTGGCATCTAATTTTGTTCCTGGAAATAATTCA
AATTTTACTTCTCCGTTAGAATCTAATCATTCTTTTATTCCTCCCCCAAACACTTTTGGTCAAGCAAAAG
CACCACCCCCAAAACAAGACTTTACTCAAGGAGCAACCAAAAACACTAATCAAAATTCCTCTGCTCATCC
ACCTCACTTGAATATGGATGACACAGTGAATCAGAGTAATATTGAATTAAAAAATGTTAATCGAAACAAT
GCAGTAAATCAGGAGAACAGCCGTTCAAGTAGCACTGAAGCCACAAACAATAACCCTGCAAATGGGACGC
AGAATAAGCCACGACAACCAAGAGGTGCAGCAGATGCCTGCACCACAGAAAAAAGCAATAAATCCTCTCT
TCACCCAAACCGTCATGGCCATTCGTCTTCTGACCCAGTGTATCCTTGTGGAATTTGTACAAACGAGGTG
AACGATGATCAGGATGCCATCTTATGTGAGGCCTCTTGTCAGAAATGGTTTCATCGGATCTGTACTGGAA
TGACTGAAACAGCTTATGGCCTCTTAACTGCAGAAGCATCTGCAGTATGGGGCTGTGATACCTGTATGGC
TGACAAAGATGTCCAGTTAATGCGTACTAGAGAAACTTTTGGTCCATCTGCAGTGGGCAGTGATGCTTAA

Translation (419 aa):
MSAEQEKDPISLKRVRGGDSGLDGLGGPGVQLGSPDKKKRKANTQGPSFPPLSEYAPPPNPNSDHLVAAN
PFDDNYNTISYKPLPSSNPYLGPGYPGFGGYSTFRMPPHVPPRMSSPYCGPYSLRNQPHPFPQNPLGMGF
NRPHAFNFGPHDNSSFGNPSYNNALSQNVNMPNQHFRQNPAENFSQIPPQNASQVSNPDLASNFVPGNNS
NFTSPLESNHSFIPPPNTFGQAKAPPPKQDFTQGATKNTNQNSSAHPPHLNMDDTVNQSNIELKNVNRNN
AVNQENSRSSSTEATNNNPANGTQNKPRQPRGAADACTTEKSNKSSLHPNRHGHSSSDPVYPCGICTNEV
NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMADKDVQLMRTRETFGPSAVGSDA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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