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Report for CCDS1671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1671.1 Public Homo sapiens 2 HPCAL1 24 110 108 CCDS HistoryNCBI Gene:3241Re-query CCDS DB by CCDS ID:1671.1Re-query CCDS DB by GeneID:3241See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307845.8 ENSP00000310749.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307845.8Link to Ensembl Protein Viewer:ENSP00000310749.3Re-query CCDS DB by Nucleotide ID:ENST00000307845Re-query CCDS DB by Protein ID:ENSP00000310749
Original member Current member EBI ENST00000381765.7 ENSP00000371184.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381765.7Link to Ensembl Protein Viewer:ENSP00000371184.3Re-query CCDS DB by Nucleotide ID:ENST00000381765Re-query CCDS DB by Protein ID:ENSP00000371184
Original member Current member EBI ENST00000613496.4 ENSP00000478231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613496.4Link to Ensembl Protein Viewer:ENSP00000478231.1Re-query CCDS DB by Nucleotide ID:ENST00000613496Re-query CCDS DB by Protein ID:ENSP00000478231
Original member Current member EBI ENST00000622018.4 ENSP00000482993.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622018.4Link to Ensembl Protein Viewer:ENSP00000482993.1Re-query CCDS DB by Nucleotide ID:ENST00000622018Re-query CCDS DB by Protein ID:ENSP00000482993
Original member Current member EBI ENST00000620771.4 ENSP00000483786.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620771.4Link to Ensembl Protein Viewer:ENSP00000483786.1Re-query CCDS DB by Nucleotide ID:ENST00000620771Re-query CCDS DB by Protein ID:ENSP00000483786
Original member Current member NCBI NM_001258357.2 NP_001245286.1 Accepted alive Link to Nucleotide Sequence:NM_001258357.2Link to Protein Sequence:NP_001245286.1Re-query CCDS DB by Nucleotide ID:NM_001258357Re-query CCDS DB by Protein ID:NP_001245286Link to BLAST:NP_001245286.1
Original member Current member NCBI NM_001258358.2 NP_001245287.1 Accepted alive Link to Nucleotide Sequence:NM_001258358.2Link to Protein Sequence:NP_001245287.1Re-query CCDS DB by Nucleotide ID:NM_001258358Re-query CCDS DB by Protein ID:NP_001245287Link to BLAST:NP_001245287.1
Original member Current member NCBI NM_001258359.2 NP_001245288.1 Accepted alive Link to Nucleotide Sequence:NM_001258359.2Link to Protein Sequence:NP_001245288.1Re-query CCDS DB by Nucleotide ID:NM_001258359Re-query CCDS DB by Protein ID:NP_001245288Link to BLAST:NP_001245288.1
Original member Current member NCBI NM_002149.4 NP_002140.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002149.4Link to Protein Sequence:NP_002140.2Re-query CCDS DB by Nucleotide ID:NM_002149Re-query CCDS DB by Protein ID:NP_002140Link to BLAST:NP_002140.2
Original member Current member NCBI NM_134421.3 NP_602293.1 Accepted alive Link to Nucleotide Sequence:NM_134421.3Link to Protein Sequence:NP_602293.1Re-query CCDS DB by Nucleotide ID:NM_134421Re-query CCDS DB by Protein ID:NP_602293Link to BLAST:NP_602293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245286.1 193 P37235 193 100% 0 0
NP_001245287.1 193 P37235 193 100% 0 0
NP_001245288.1 193 P37235 193 100% 0 0
NP_002140.2 193 P37235 193 100% 0 0
NP_602293.1 193 P37235 193 100% 0 0

Chromosomal Locations for CCDS 1671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10419758 10420135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10422983 10423088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10426724 10426821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGCAAACAGAACAGCAAGCTGCGGCCCGAGGTGCTGCAGGACCTGCGGGAGAACACGGAGTTCACCG
ACCACGAGCTGCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACCGGCCACCTGACCGTGGACGA
GTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGCGACGCTTCCAAGTTCGCCGAGCACGTCTTCCGC
ACCTTCGACACCAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCATTGCGCTGAGCGTGACCTCGC
GGGGCAAGCTGGAGCAGAAGCTCAAGTGGGCCTTCAGCATGTACGACCTGGACGGCAACGGCTACATCAG
CCGCAGCGAGATGCTGGAGATCGTGCAGGCCATCTACAAGATGGTGTCGTCTGTGATGAAGATGCCGGAG
GATGAGTCCACCCCGGAGAAGCGCACAGACAAGATCTTCAGGCAGATGGACACCAACAATGACGGCAAAC
TGTCCTTGGAAGAATTCATCAGAGGTGCCAAGAGCGACCCCTCCATCGTCCGCCTGCTGCAGTGCGACCC
CAGCAGTGCCAGTCAGTTCTGA

Translation (193 aa):
MGKQNSKLRPEVLQDLRENTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGDASKFAEHVFR
TFDTNGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPE
DESTPEKRTDKIFRQMDTNNDGKLSLEEFIRGAKSDPSIVRLLQCDPSSASQF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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