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Report for CCDS59271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59271.1 Public Homo sapiens 16 IST1 24 110 108 CCDS HistoryNCBI Gene:9798Re-query CCDS DB by CCDS ID:59271.1Re-query CCDS DB by GeneID:9798See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535424.5 ENSP00000438399.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535424.5Link to Ensembl Protein Viewer:ENSP00000438399.1Re-query CCDS DB by Nucleotide ID:ENST00000535424Re-query CCDS DB by Protein ID:ENSP00000438399
Original member Current member NCBI NM_001270976.1 NP_001257905.1 Accepted alive Link to Nucleotide Sequence:NM_001270976.1Link to Protein Sequence:NP_001257905.1Re-query CCDS DB by Nucleotide ID:NM_001270976Re-query CCDS DB by Protein ID:NP_001257905Link to BLAST:NP_001257905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257905.1 379 P53990-5 379 100% 0 0

Chromosomal Locations for CCDS 59271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71894835 71894858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71915626 71915728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71916462 71916642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71917047 71917134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71920739 71920822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71921343 71921453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71922474 71922680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71923288 71923380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71924769 71924817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 71927614 71927813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGTTTTCAAGTTAAAAACAAAGGAGGAACAGCACAGCATGCTGGGCTCTGGATTTAAAGCTGAGCGCT
TAAGAGTGAATTTGAGATTAGTCATAAATCGCCTTAAACTATTGGAGAAAAAGAAAACGGAACTGGCCCA
GAAAGCAAGGAAGGAGATTGCTGACTATCTGGCTGCTGGGAAAGATGAACGAGCTCGGATCCGTGTGGAG
CACATTATCCGGGAAGACTACCTCGTGGAGGCCATGGAGATCCTGGAGCTGTACTGTGACCTGCTGCTGG
CTCGGTTTGGCCTTATCCAGTCTATGAAGGAACTAGATTCTGGTCTGGCTGAATCTGTGTCTACATTGAT
CTGGGCTGCTCCTCGACTCCAGTCAGAAGTGGCTGAGTTGAAAATAGTTGCTGATCAGCTCTGTGCCAAG
TATAGCAAGGAATATGGCAAGCTATGTAGGACCAACCAGATTGGAACTGTGAATGACAGGCTAATGCACA
AGCTGAGTGTGGAAGCCCCACCCAAAATCCTGGTGGAGAGATACCTGATTGAAATTGCAAAGAATTACAA
CGTACCCTATGAACCTGACTCTGTGGTCATGGCAGAAGCTCCTCCTGGGGTAGAGACAGATCTTATTGAT
GTTGGATTCACAGATGATGTGAAGAAAGGAGGCCCTGGAAGAGGAGGGAGTGGTGGCTTCACAGCACCAG
TTGGTGGACCTGATGGAACGGTGCCAATGCCCATGCCCATGCCCATGCCTATGCCATCTGCAAATACGCC
TTTCTCATATCCACTGCCAAAGGGACCATCAGATTTCAATGGACTGCCAATGGGGACTTATCAGGCCTTT
CCCAATATTCATCCACCTCAGATACCAGCAACTCCCCCATCGTATGAATCTGTAGATGACATTAATGCTG
ATAAGAATATCTCTTCTGCACAGATTGTTGGTCCTGGACCCAAGCCAGAAGCCTCTGCAAAGCTTCCTTC
CAGACCTGCAGATAACTATGACAACTTTGTCCTACCAGAGTTGCCATCTGTGCCAGACACACTACCAACT
GCATCTGCTGGTGCCAGCACCTCAGCATCTGAAGACATTGACTTTGATGATCTTTCCCGGAGGTTTGAAG
AGCTGAAAAAGAAAACATAG

Translation (379 aa):
MVFKLKTKEEQHSMLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVE
HIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIVADQLCAK
YSKEYGKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEPDSVVMAEAPPGVETDLID
VGFTDDVKKGGPGRGGSGGFTAPVGGPDGTVPMPMPMPMPMPSANTPFSYPLPKGPSDFNGLPMGTYQAF
PNIHPPQIPATPPSYESVDDINADKNISSAQIVGPGPKPEASAKLPSRPADNYDNFVLPELPSVPDTLPT
ASAGASTSASEDIDFDDLSRRFEELKKKT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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