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Report for CCDS7833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7833.1 Public Homo sapiens 11 SAA2 24 110 108 CCDS HistoryNCBI Gene:6289Re-query CCDS DB by CCDS ID:7833.1Re-query CCDS DB by GeneID:6289See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7833.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256733.9 ENSP00000256733.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256733.9Link to Ensembl Protein Viewer:ENSP00000256733.5Re-query CCDS DB by Nucleotide ID:ENST00000256733Re-query CCDS DB by Protein ID:ENSP00000256733
Original member Current member EBI ENST00000526900.1 ENSP00000436126.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526900.1Link to Ensembl Protein Viewer:ENSP00000436126.1Re-query CCDS DB by Nucleotide ID:ENST00000526900Re-query CCDS DB by Protein ID:ENSP00000436126
Original member Current member EBI ENST00000529528.5 ENSP00000437162.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529528.5Link to Ensembl Protein Viewer:ENSP00000437162.1Re-query CCDS DB by Nucleotide ID:ENST00000529528Re-query CCDS DB by Protein ID:ENSP00000437162
Original member Current member NCBI NM_001385666.1 NP_001372595.1 Accepted alive Link to Nucleotide Sequence:NM_001385666.1Link to Protein Sequence:NP_001372595.1Re-query CCDS DB by Nucleotide ID:NM_001385666Re-query CCDS DB by Protein ID:NP_001372595Link to BLAST:NP_001372595.1
Original member Current member NCBI NM_030754.5 NP_110381.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030754.5Link to Protein Sequence:NP_110381.2Re-query CCDS DB by Nucleotide ID:NM_030754Re-query CCDS DB by Protein ID:NP_110381Link to BLAST:NP_110381.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372595.1 122 P0DJI9-1 122 100% 0 0
NP_110381.2 122 P0DJI9-1 122 100% 0 0

Chromosomal Locations for CCDS 7833.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18245377 18245515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18245910 18246048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18247921 18248011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (369 nt):
ATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGAGTGTCAGCAGCCGAAGCTTCTTTTCGT
TCCTTGGCGAGGCTTTTGATGGGGCTCGGGACATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTA
CATCGGCTCAGACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACCTGGGGGTGCC
TGGGCTGCAGAAGTGATCAGCAATGCCAGAGAGAATATCCAGAGACTCACAGGCCGTGGTGCGGAGGACT
CGCTGGCCGATCAGGCTGCCAATAAATGGGGCAGGAGTGGCAGAGACCCCAATCACTTCCGACCTGCTGG
CCTGCCTGAGAAATACTGA

Translation (122 aa):
MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGA
WAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPEKY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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