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Report for CCDS6394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6394.1 Public Homo sapiens 8 LY6E 24 110 108 CCDS HistoryNCBI Gene:4061Re-query CCDS DB by CCDS ID:6394.1Re-query CCDS DB by GeneID:4061See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292494.11 ENSP00000292494.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292494.11Link to Ensembl Protein Viewer:ENSP00000292494.6Re-query CCDS DB by Nucleotide ID:ENST00000292494Re-query CCDS DB by Protein ID:ENSP00000292494
Original member Current member EBI ENST00000429120.6 ENSP00000414307.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429120.6Link to Ensembl Protein Viewer:ENSP00000414307.2Re-query CCDS DB by Nucleotide ID:ENST00000429120Re-query CCDS DB by Protein ID:ENSP00000414307
Original member Current member EBI ENST00000521699.5 ENSP00000427915.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521699.5Link to Ensembl Protein Viewer:ENSP00000427915.1Re-query CCDS DB by Nucleotide ID:ENST00000521699Re-query CCDS DB by Protein ID:ENSP00000427915
Original member Current member EBI ENST00000522971.5 ENSP00000428159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522971.5Link to Ensembl Protein Viewer:ENSP00000428159.1Re-query CCDS DB by Nucleotide ID:ENST00000522971Re-query CCDS DB by Protein ID:ENSP00000428159
Original member Current member EBI ENST00000521003.5 ENSP00000428169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521003.5Link to Ensembl Protein Viewer:ENSP00000428169.1Re-query CCDS DB by Nucleotide ID:ENST00000521003Re-query CCDS DB by Protein ID:ENSP00000428169
Original member Current member EBI ENST00000517503.1 ENSP00000428427.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517503.1Link to Ensembl Protein Viewer:ENSP00000428427.3Re-query CCDS DB by Nucleotide ID:ENST00000517503Re-query CCDS DB by Protein ID:ENSP00000428427
Original member Current member EBI ENST00000522024.1 ENSP00000428442.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522024.1Link to Ensembl Protein Viewer:ENSP00000428442.1Re-query CCDS DB by Nucleotide ID:ENST00000522024Re-query CCDS DB by Protein ID:ENSP00000428442
Original member Current member EBI ENST00000520466.5 ENSP00000428572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520466.5Link to Ensembl Protein Viewer:ENSP00000428572.1Re-query CCDS DB by Nucleotide ID:ENST00000520466Re-query CCDS DB by Protein ID:ENSP00000428572
Original member Current member NCBI NM_001127213.2 NP_001120685.1 Accepted alive Link to Nucleotide Sequence:NM_001127213.2Link to Protein Sequence:NP_001120685.1Re-query CCDS DB by Nucleotide ID:NM_001127213Re-query CCDS DB by Protein ID:NP_001120685Link to BLAST:NP_001120685.1
Original member Current member NCBI NM_002346.3 NP_002337.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002346.3Link to Protein Sequence:NP_002337.1Re-query CCDS DB by Nucleotide ID:NM_002346Re-query CCDS DB by Protein ID:NP_002337Link to BLAST:NP_002337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120685.1 131 Q16553 131 100% 0 0
NP_002337.1 131 Q16553 131 100% 0 0

Chromosomal Locations for CCDS 6394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143020940 143020991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143021314 143021433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143021566 143021789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGAAGATCTTCTTGCCAGTGCTGCTGGCTGCCCTTCTGGGTGTGGAGCGAGCCAGCTCGCTGATGTGCT
TCTCCTGCTTGAACCAGAAGAGCAATCTGTACTGCCTGAAGCCGACCATCTGCTCCGACCAGGACAACTA
CTGCGTGACTGTGTCTGCTAGTGCCGGCATTGGGAATCTCGTGACATTTGGCCACAGCCTGAGCAAGACC
TGTTCCCCGGCCTGCCCCATCCCAGAAGGCGTCAATGTTGGTGTGGCTTCCATGGGCATCAGCTGCTGCC
AGAGCTTTCTGTGCAATTTCAGTGCGGCCGATGGCGGGCTGCGGGCAAGCGTCACCCTGCTGGGTGCCGG
GCTGCTGCTGAGCCTGCTGCCGGCCCTGCTGCGGTTTGGCCCCTGA

Translation (131 aa):
MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSLSKT
CSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAGLLLSLLPALLRFGP


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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