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Report for CCDS58942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58942.1 Public Homo sapiens 5 ATPSCKMT 24 110 108 CCDS HistoryNCBI Gene:134145Re-query CCDS DB by CCDS ID:58942.1Re-query CCDS DB by GeneID:134145See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510047.5 ENSP00000420876.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510047.5Link to Ensembl Protein Viewer:ENSP00000420876.1Re-query CCDS DB by Nucleotide ID:ENST00000510047Re-query CCDS DB by Protein ID:ENSP00000420876
Original member Current member NCBI NM_001258388.2 NP_001245317.1 Accepted alive Link to Nucleotide Sequence:NM_001258388.2Link to Protein Sequence:NP_001245317.1Re-query CCDS DB by Nucleotide ID:NM_001258388Re-query CCDS DB by Protein ID:NP_001245317Link to BLAST:NP_001245317.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245317.1 216 Q6P4H8-2 216 100% 0 0

Chromosomal Locations for CCDS 58942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10227441 10227647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10236478 10236615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10239067 10239356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10249858 10249873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGAGGGAGGAGGAGGTATACCCCTAGAAACACTTAAAGAAGAAAGTCAGTCAAGACATGTTCTACCTG
CAAGTTTTGAAGTCAACAGTTTGCAGAAAAGCAACTGGGGGTTCTTACTTACTGGGCTTGTGGGTGGCAC
CCTGGTGGCTGTGTACGCTGTAGCCACGCCGTTTGTAACGCCAGCCCTTCGAAAAGTCTGTTTGCCGTTT
GTACCTGCAACTACGAAGCAGATTGAAAATGTTGTGAAAATGTTGCGATGCCGAAGAGGATCCCTTGTGG
ACATCGGTAGTGGGGACGGACGCATTGTCATAGCGGCTGCGAAGAAAGGGTTCACAGCAGTTGGTTATGA
ATTAAACCCATGGCTAGTTTGGTATTCCAGATACCGCGCTTGGCGAGAAGGTGTGCATGGATCTGCCAAA
TTTTATATTTCAGATTTGTGGAAGATGCTGCAGTTGGAGAAGAAACTTGAACGTGAACTTGAGGATGATG
CACGAGTTATTGCTTGCCGGTTCCCTTTCCCACATTGGACTCCAGACCACGTCACGGGGGAGGGGATAGA
CACAGTGTGGGCATATGATGCAAGCACTTTTAGAGGCCGTGAAAAGAGGCCCTGTACATCGATGCATTTC
CAGCTGCCCATTCAAGCATAA

Translation (216 aa):
MEGGGGIPLETLKEESQSRHVLPASFEVNSLQKSNWGFLLTGLVGGTLVAVYAVATPFVTPALRKVCLPF
VPATTKQIENVVKMLRCRRGSLVDIGSGDGRIVIAAAKKGFTAVGYELNPWLVWYSRYRAWREGVHGSAK
FYISDLWKMLQLEKKLERELEDDARVIACRFPFPHWTPDHVTGEGIDTVWAYDASTFRGREKRPCTSMHF
QLPIQA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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