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Report for CCDS54760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54760.1 Public Homo sapiens 4 APBB2 24 110 108 CCDS HistoryNCBI Gene:323Re-query CCDS DB by CCDS ID:54760.1Re-query CCDS DB by GeneID:323See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54760.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504305.5 ENSP00000423765.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504305.5Link to Ensembl Protein Viewer:ENSP00000423765.1Re-query CCDS DB by Nucleotide ID:ENST00000504305Re-query CCDS DB by Protein ID:ENSP00000423765
Original member Current member EBI ENST00000502841.5 ENSP00000425802.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502841.5Link to Ensembl Protein Viewer:ENSP00000425802.1Re-query CCDS DB by Nucleotide ID:ENST00000502841Re-query CCDS DB by Protein ID:ENSP00000425802
Original member Current member EBI ENST00000543538.5 ENSP00000439357.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543538.5Link to Ensembl Protein Viewer:ENSP00000439357.1Re-query CCDS DB by Nucleotide ID:ENST00000543538Re-query CCDS DB by Protein ID:ENSP00000439357
Original member Current member NCBI NM_001166051.2 NP_001159523.1 Accepted alive Link to Nucleotide Sequence:NM_001166051.2Link to Protein Sequence:NP_001159523.1Re-query CCDS DB by Nucleotide ID:NM_001166051Re-query CCDS DB by Protein ID:NP_001159523Link to BLAST:NP_001159523.1
Original member Current member NCBI NM_001166052.2 NP_001159524.1 Accepted alive Link to Nucleotide Sequence:NM_001166052.2Link to Protein Sequence:NP_001159524.1Re-query CCDS DB by Nucleotide ID:NM_001166052Re-query CCDS DB by Protein ID:NP_001159524Link to BLAST:NP_001159524.1
Original member Current member NCBI NM_001166053.1 NP_001159525.1 Accepted alive Link to Nucleotide Sequence:NM_001166053.1Link to Protein Sequence:NP_001159525.1Re-query CCDS DB by Nucleotide ID:NM_001166053Re-query CCDS DB by Protein ID:NP_001159525Link to BLAST:NP_001159525.1
Original member Current member NCBI NM_001166054.1 NP_001159526.1 Accepted alive Link to Nucleotide Sequence:NM_001166054.1Link to Protein Sequence:NP_001159526.1Re-query CCDS DB by Nucleotide ID:NM_001166054Re-query CCDS DB by Protein ID:NP_001159526Link to BLAST:NP_001159526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159523.1 210 Q92870-3 210 100% 0 0
NP_001159524.1 210 Q92870-3 210 100% 0 0
NP_001159525.1 210 Q92870-3 210 100% 0 0
NP_001159526.1 210 Q92870-3 210 100% 0 0

Chromosomal Locations for CCDS 54760.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40816092 40816259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40821871 40822050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40823644 40823759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40825887 40825970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40827132 40827216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGCTGAACGGAAGAATGCCAAAGCGCTGGCCTGCAGCTCCTTACAGGAAAGGGCCAATGTGAACCTCG
ATGTCCCTTTGCAAGTAGATTTTCCAACACCAAAGACTGAGCTGGTCCAGAAGTTCCACGTGCAGTACTT
GGGCATGTTACCTGTAGACAAACCAGTCGGAATGGATATTTTGAACAGTGCCATAGAAAATCTTATGACC
TCATCCAACAAGGAGGACTGGCTGTCAGTGAACATGAACGTGGCTGATGCCACTGTGACTGTCATCAGTG
AAAAGAATGAAGAGGAAGTCTTAGTGGAATGTCGTGTGCGATTCCTGTCCTTCATGGGTGTTGGGAAGGA
CGTCCACACATTTGCCTTCATCATGGACACGGGGAACCAGCGCTTTGAGTGCCACGTTTTCTGGTGCGAG
CCTAATGCTGGTAACGTGTCTGAGGCGGTGCAGGCCGCCTGCATGTTACGATATCAGAAGTGCTTGGTAG
CCAGGCCGCCTTCTCAGAAAGTTCGACCACCTCCACCGCCAGCAGATTCAGTAACCAGAAGAGTCACAAC
CAATGTAAAACGAGGGGTCTTATCCCTCATTGACACTTTGAAACAGAAACGCCCTGTCACCGAAATGCCA
TAG

Translation (210 aa):
MAERKNAKALACSSLQERANVNLDVPLQVDFPTPKTELVQKFHVQYLGMLPVDKPVGMDILNSAIENLMT
SSNKEDWLSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCE
PNAGNVSEAVQAACMLRYQKCLVARPPSQKVRPPPPPADSVTRRVTTNVKRGVLSLIDTLKQKRPVTEMP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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