NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1535.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1535.2 Public Homo sapiens 1 FAM177B 24 110 108 CCDS HistoryNCBI Gene:400823Re-query CCDS DB by CCDS ID:1535.2Re-query CCDS DB by GeneID:400823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1535.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360827.6 ENSP00000354070.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360827.6Link to Ensembl Protein Viewer:ENSP00000354070.2Re-query CCDS DB by Nucleotide ID:ENST00000360827Re-query CCDS DB by Protein ID:ENSP00000354070
Original member Current member EBI ENST00000445590.4 ENSP00000414451.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000445590.4Link to Ensembl Protein Viewer:ENSP00000414451.2Re-query CCDS DB by Nucleotide ID:ENST00000445590Re-query CCDS DB by Protein ID:ENSP00000414451
Original member Current member NCBI NM_001324080.2 NP_001311009.1 Accepted alive Link to Nucleotide Sequence:NM_001324080.2Link to Protein Sequence:NP_001311009.1Re-query CCDS DB by Nucleotide ID:NM_001324080Re-query CCDS DB by Protein ID:NP_001311009Link to BLAST:NP_001311009.1
Original member Current member NCBI NM_001394345.1 NP_001381274.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394345.1Link to Protein Sequence:NP_001381274.1Re-query CCDS DB by Nucleotide ID:NM_001394345Re-query CCDS DB by Protein ID:NP_001381274Link to BLAST:NP_001381274.1
Original member Current member NCBI NM_207468.3 NP_997351.2 Accepted alive Link to Nucleotide Sequence:NM_207468.3Link to Protein Sequence:NP_997351.2Re-query CCDS DB by Nucleotide ID:NM_207468Re-query CCDS DB by Protein ID:NP_997351Link to BLAST:NP_997351.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311009.1 158 A6PVY3-1 158 100% 0 0
NP_001381274.1 158 A6PVY3-1 158 100% 0 0
NP_997351.2 158 A6PVY3-1 158 100% 0 0

Chromosomal Locations for CCDS 1535.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 222746546 222746719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222747015 222747081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222749465 222749562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 222749921 222750058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGAGATTGACGGTTTCCAGCAGTTAGACCTAGAGAAGAGTGTACCTTCCAAAAAGACTACTCCTAAAA
GGATTATCCATTTTGTTGACGGAGACATCATGGAAGAATATAGCACAGAGGAGGAGGAGGAAGAGGAAAA
GGAGGAGCAGAGCACAAATTCAACACTTGACCCTTCTAAACTTTCCTGGGGGCCCTACCTACGATTTTGG
GCAGGACGAATAGCAAGCACCTCATTTTCTACATGTGAATTCCTTGGTGGAAGATTTGCTGTCTTCTTTG
GTCTTACTCAACCCAAATATCAGTATGTGTTAAACGAGTTCTATAGGATACAAAACAAGAAAAGTGACAA
CAAAAGTGAAAGGAGAGGATCAAAGGCCCAGGCAGCTGAGGTTCCTAATGAAAAGTGTCACTTGGAGGCT
GGGGTCCAAGAGTATGGAACCATACAACAGGATGTGACAGAGGCCATTCCTCAGTGA

Translation (158 aa):
MEIDGFQQLDLEKSVPSKKTTPKRIIHFVDGDIMEEYSTEEEEEEEKEEQSTNSTLDPSKLSWGPYLRFW
AGRIASTSFSTCEFLGGRFAVFFGLTQPKYQYVLNEFYRIQNKKSDNKSERRGSKAQAAEVPNEKCHLEA
GVQEYGTIQQDVTEAIPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH