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Report for CCDS47135.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
47135.1 |
Public |
Homo sapiens |
4 |
PABPC4L |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:132430](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:47135.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:132430](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 47135.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000421491.4 |
ENSP00000463233.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000421491.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000463233.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000421491](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000463233](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001114734.2 |
NP_001108206.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001114734.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001108206.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001114734](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001108206](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001108206.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001363585.1 |
NP_001350514.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001363585.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001350514.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001363585](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001350514](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001350514.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 47135.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1113 nt): ATGAATGTAGCAGCCAAGTACCGCATGGCCTCCCTGTATGTGGGTGACTTACATGCAGATGTCACCGAGG ACCTGCTGTTCAGGAAGTTCAGCACTGTGGGGCCTGTGCTGTCCATCCGCATTTGCAGGGACCAGGTCAC CCGCCGCTCTCTGGGCTATGCCTACGTGAACTTCTTGCAGCTGGCTGATGCCCAGAAGGCGCTGGACACA ATGAACTTTGACATCATAAAAGGCAAATCCATCCGTCTCATGTGGTCTCAGCGCGATGCCTACTTGAGGA GATCTGGAATTGGGAACGTATTCATCAAGAATCTGGACAAATCTATCGATAACAAAACCCTTTATGAACA TTTTTCAGCTTTTGGAAAGATCCTTTCCTCCAAGGTGATGAGTGATGATCAAGGCTCCAAGGGCTATGCA TTTGTGCACTTTCAGAACCAGAGTGCTGCAGACAGGGCCATTGAGGAGATGAATGGAAAACTACTCAAGG GCTGCAAGGTGTTTGTTGGCAGATTCAAAAACCGAAAAGATCGTGAAGCTGAACTCAGAAGCAAAGCCAG TGAATTCACCAATGTTTACATAAAAAACTTTGGAGGTGACATGGATGATGAGAGATTGAAGGACGTTTTC AGCAAATATGGCAAAACTCTGAGTGTTAAGGTGATGACAGATTCCAGTGGGAAATCCAAAGGCTTTGGCT TTGTGAGTTTTGATAGCCATGAGGCTGCCAAGAAAGCTGTTGAAGAAATGAATGGAAGGGACATAAATGG GCAGCTGATTTTTGTAGGCCGGGCTCAAAAGAAAGTCGAGCGACAGGCTGAGTTAAAGCAAATGTTTGAG CAGCTGAAAAGGGAACGAATTCGTGGGTGCCAGGGGGTAAAACTCTATATTAAGAACCTTGATGACACCA TCGATGATGAAAAACTACGAAACGAATTTTCTTCATTTGGATCAATTAGCAGAGTTAAGGTAATGCAGGA AGAGGGGCAGAGCAAAGGGTTTGGCTTGATCTGCTTCTCCTCTCCTGAGGATGCTACTAAAGCAATGACT GAGATGAATGGCCGCATCTTGGGCTCCAAACCTCTTAGCATTGCCTTGGCCCAGAGACACTAG
Translation (370 aa): MNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYA FVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF SKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE QLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMT EMNGRILGSKPLSIALAQRH
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