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Report for CCDS43366.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43366.2 Public Homo sapiens 5 SLC25A48 24 110 108 CCDS HistoryNCBI Gene:153328Re-query CCDS DB by CCDS ID:43366.2Re-query CCDS DB by GeneID:153328See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 43366.1
The coding region has been updated to represent an alternate 3' splice pattern that is more supported by the available transcript data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43366.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412661.3 ENSP00000413049.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412661.3Link to Ensembl Protein Viewer:ENSP00000413049.2Re-query CCDS DB by Nucleotide ID:ENST00000412661Re-query CCDS DB by Protein ID:ENSP00000413049
Original member Current member NCBI NM_145282.5 NP_660325.4 Accepted alive Link to Nucleotide Sequence:NM_145282.5Link to Protein Sequence:NP_660325.4Re-query CCDS DB by Nucleotide ID:NM_145282Re-query CCDS DB by Protein ID:NP_660325Link to BLAST:NP_660325.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660325.4 157 Q6ZT89-3 157 100% 0 0

Chromosomal Locations for CCDS 43366.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135834848 135834893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135842416 135842459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135850425 135850496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135852563 135852821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135888032 135888084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGGGAAGCTTCCAGCTGGAAGACTTTGCGGCGGGCTGGATCGGAGGTGCAGCCAGTGTCATCGTTGGCC
ACCCTCTGGACACAGTCAAGACTCGCCTGCAGGCTGGCGTTGGCTACGGAAACACCCTCAGCTGCATCCG
CGTGGTGTACAGGAGGGAGAGTATGTTCGGCTTCTTCAAGGGCATGTCCTTCCCCCTCGCCAGCATTGCC
GTCTACAACTCCGTGGTGTTTGGGGTCTTCAGTAACACGCAGCGGTTCCTCAGCCAGCACCGCTGCGGGG
AGCCAGAGGCCAGTCCTCCCCGCACGCTGTCAGACCTGCTCCTGGCCAGCATGGTGGCCGGCGTGGTCTC
TGTCGGGCTGGGAGGGCCCGTGGACCTCATCAAGATCCGGTTGCAGATGCAGACACAACCGTTTCGGGAC
GGAGGTGAACACAGGATGACTACAGTGTTCCCTGGGCCTCATCTCTGCATGTGA

Translation (157 aa):
MGSFQLEDFAAGWIGGAASVIVGHPLDTVKTRLQAGVGYGNTLSCIRVVYRRESMFGFFKGMSFPLASIA
VYNSVVFGVFSNTQRFLSQHRCGEPEASPPRTLSDLLLASMVAGVVSVGLGGPVDLIKIRLQMQTQPFRD
GGEHRMTTVFPGPHLCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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