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Report for CCDS77428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77428.1 Public Homo sapiens 2 TRABD2A 24 110 108 CCDS HistoryNCBI Gene:129293Re-query CCDS DB by CCDS ID:77428.1Re-query CCDS DB by GeneID:129293See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409133.1 ENSP00000387183.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409133.1Link to Ensembl Protein Viewer:ENSP00000387183.1Re-query CCDS DB by Nucleotide ID:ENST00000409133Re-query CCDS DB by Protein ID:ENSP00000387183
Original member Current member NCBI NM_001307978.2 NP_001294907.1 Accepted alive Link to Nucleotide Sequence:NM_001307978.2Link to Protein Sequence:NP_001294907.1Re-query CCDS DB by Nucleotide ID:NM_001307978Re-query CCDS DB by Protein ID:NP_001294907Link to BLAST:NP_001294907.1

Chromosomal Locations for CCDS 77428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84838231 84838241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84839149 84839323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84841861 84842007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84870225 84870785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84880932 84881039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAGTCCCTGGAGCTGGTTCCTGCTGCAGACCCTCTGCCTCCTGCCCACGGGCGCAGCTTCGCGGCGCG
GGGCGCCCGGCACCGCCAACTGCGAGCTCAAGCCCCAACAAAGCGAGCTGAATTCCTTCTTGTGGACCAT
TAAGCGAGACCCACCATCTTACTTCTTTGGCACAATCCATGTCCCGTACACCCGAGTTTGGGACTTCATC
CCCGACAACTCTAAGGAGGCTTTCCTGCAGAGCAGCATTGTGTACTTTGAGTTGGATCTCACAGACCCCT
ATACCATCTCAGCTCTCACCAGCTGTCAGATGCTGCCACAGGGCGAGAACCTCCAAGATGTGCTCCCCAG
GGACATCTACTGCCGCCTCAAGCGCCACCTGGAGTATGTCAAGCTCATGATGCCCTTGTGGATGACCCCA
GACCAGCGCGGCAAGGGGCTCTACGCAGACTACCTCTTCAATGCTATTGCCGGAAACTGGGAGCGCAAGA
GGCCTGTCTGGGTGATGCTCATGGTCAACTCCCTGACTGAAGTGGACATTAAGTCCCGTGGAGTGCCTGT
CTTAGACCTGTTCCTTGCCCAGGAGGCTGAGCGGCTGAGGAAACAGACTGGGGCAGTGGAAAAGGTGGAA
GAGCAGTGCCATCCATTGAATGGGTTGAACTTTTCACAGGTCATCTTTGCTTTGAACCAGACCCTCCTGC
AGCAGGAAAGCCTGCGAGCAGGCAGTCTTCAGATCCCCTACACGACGGAGGATCTCATCAAACACTATAA
CTGCGGGGACCTCAGCTCCGTCATCCTCAGCCATGACAGCTCCCAGGTTCCCAATTTTATTAATGCCACG
CTACCACCTCAGGAGCGCATCACTGCTCAGGAGATTGACAGCTACTTACGCCGGGAGCTGATCTACAAGC
GGAATGAGAGAATAGGGAAGCGGGTGAAGGCCCTTTTGGAGGAGTTCCCTGACAAAGGCTTCTTCTTTGC
CTTTGGAGCTGCTTCACAGTAG

Translation (333 aa):
MSPWSWFLLQTLCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVPYTRVWDFI
PDNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIYCRLKRHLEYVKLMMPLWMTP
DQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLFLAQEAERLRKQTGAVEKVE
EQCHPLNGLNFSQVIFALNQTLLQQESLRAGSLQIPYTTEDLIKHYNCGDLSSVILSHDSSQVPNFINAT
LPPQERITAQEIDSYLRRELIYKRNERIGKRVKALLEEFPDKGFFFAFGAASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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