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Report for CCDS9180.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9180.2 Public Homo sapiens 12 RNFT2 24 110 108 CCDS HistoryNCBI Gene:84900Re-query CCDS DB by CCDS ID:9180.2Re-query CCDS DB by GeneID:84900See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9180.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407967.7 ENSP00000385669.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407967.7Link to Ensembl Protein Viewer:ENSP00000385669.3Re-query CCDS DB by Nucleotide ID:ENST00000407967Re-query CCDS DB by Protein ID:ENSP00000385669
Original member Current member NCBI NM_032814.4 NP_116203.2 Accepted alive Link to Nucleotide Sequence:NM_032814.4Link to Protein Sequence:NP_116203.2Re-query CCDS DB by Nucleotide ID:NM_032814Re-query CCDS DB by Protein ID:NP_116203Link to BLAST:NP_116203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116203.2 420 Q96EX2-5 420 100% 0 0

Chromosomal Locations for CCDS 9180.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 116740498 116740521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116741036 116741094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116749841 116750307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116753984 116754060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116766814 116766914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116779195 116779348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116833792 116833941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116835960 116836025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116836181 116836282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116852650 116852712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGTGGCTCTTCACAGTGAATCAGGTGTTAAGGAAGATGCAGAGACGCCACAGCAGCAACACGGATAACA
TTCCACCTGAAAGAAACCGCAGCCAGGCGCTCAGCTCCGAGGCGAGTGTGGATGAAGGTGGCGTCTTTGA
GAGTCTGAAGGCAGAGGCAGCCTCCCCACCAGCGCTCTTCTCGGGCTTATCAGGCAGCCTCCCCACCAGC
TCGTTCCCCTCCAGCCTGGTGCTGGGCTCCTCGGCTGGCGGCGGGGACGTGTTCATCCAGATGCCCGCGT
CCAGGGAGGAAGGAGGGGGCCGGGGCGAGGGGGGCGCCTACCACCACCGCCAGCCCCACCACCATTTCCA
CCATGGCGGCCACCGCGGGGGCTCCCTGCTGCAGCACGTGGGTGGGGACCACCGGGGGCACTCGGAGGAG
GGAGGCGACGAGCAGCCTGGGACGCCCGCCCCCGCCCTGTCCGAGCTGAAGGCTGTGATCTGCTGGCTCC
AGAAAGGACTCCCCTTCATCCTGATCCTCCTGGCCAAACTGTGCTTTCAGCATAAGCTCGGCATTGCTGT
GTGCATCGGGATGGCCAGCACCTTCGCCTATGCCAACTCCACGCTTCGAGAACAGGTCTCACTGAAGGAG
AAGAGGTCAGTGCTGGTCATCTTGTGGATCCTGGCCTTTCTGGCGGGGAACACCCTCTATGTGCTTTATA
CATTCAGCTCCCAGCAGCTGTACAACAGCCTCATATTCCTGAAGCCCAACCTGGAGATGCTGGACTTCTT
TGACCTGCTATGGATTGTGGGGATCGCAGACTTTGTTCTGAAGTACATCACCATCGCCCTCAAGTGCCTC
ATCGTGGCCCTGCCCAAGATCATCCTGGCTGTCAAGTCCAAGGGAAAGTTCTATCTGGTCATCGAGGAGC
TGAGCCAGCTGTTCCGATCCCTTGTCCCCATCCAGCTGTGGTACAAATACATCATGGGTGACGACTCCTC
CAACAGCTACTTCCTGGGCGGGGTCCTGATCGTTCTCTACAGCCTCTGCAAGTCCTTCGACATCTGTGGA
CGTGTGGGCGGAGTTAGGAAAGCCCTGAAGCTTCTCTGTACCTCTCAGAACTATGGAGTCCGAGCCACCG
GGCAGCAGTGCACAGAAGCTGGTGACATCTGCGCCATCTGTCAGGCCGAGTTCCGAGAGCCTCTGATTCT
CCTGTGCCAGATGCTGTTGAAGGGGCACAAGAAATTGGAGCTGGAGAAGATTGATGAAAGTGCAGGTGTG
TAA

Translation (420 aa):
MWLFTVNQVLRKMQRRHSSNTDNIPPERNRSQALSSEASVDEGGVFESLKAEAASPPALFSGLSGSLPTS
SFPSSLVLGSSAGGGDVFIQMPASREEGGGRGEGGAYHHRQPHHHFHHGGHRGGSLLQHVGGDHRGHSEE
GGDEQPGTPAPALSELKAVICWLQKGLPFILILLAKLCFQHKLGIAVCIGMASTFAYANSTLREQVSLKE
KRSVLVILWILAFLAGNTLYVLYTFSSQQLYNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCL
IVALPKIILAVKSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICG
RVGGVRKALKLLCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQMLLKGHKKLELEKIDESAGV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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