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Report for CCDS60518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60518.1 Public Homo sapiens 10 CXCL12 24 110 108 CCDS HistoryNCBI Gene:6387Re-query CCDS DB by CCDS ID:60518.1Re-query CCDS DB by GeneID:6387See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60518.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395793.7 ENSP00000379139.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395793.7Link to Ensembl Protein Viewer:ENSP00000379139.3Re-query CCDS DB by Nucleotide ID:ENST00000395793Re-query CCDS DB by Protein ID:ENSP00000379139
Original member Current member NCBI NM_001277990.2 NP_001264919.1 Accepted alive Link to Nucleotide Sequence:NM_001277990.2Link to Protein Sequence:NP_001264919.1Re-query CCDS DB by Nucleotide ID:NM_001277990Re-query CCDS DB by Protein ID:NP_001264919Link to BLAST:NP_001264919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264919.1 103 P48061-7 103 100% 0 0

Chromosomal Locations for CCDS 60518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 44372888 44373090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44380833 44380880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 44384945 44385005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGAACGCCAAGGTCGTGGTCGTGCTGGTCCTCGTGCTGACCGCGCTCTGCCTCAGCGACGGGAAGCCCG
TCAGCCTGAGCTACAGATGCCCATGCCGATTCTTCGAAAGCCATTATTGTACTTGCCTTATTAGAGTGTC
TTTCCACGGAGCCACTCCTCTGACTCAGGGCTCCTGGGTTTTGTATTCTCTGAGCTGTGCAGGTGGGGAG
ACTGGGCTGAGGGAGCCTGGCCCCATGGTCAGCCCTAGGGTGGAGAGCCACCAAGAGGGACGCCTGGGGG
TGCCAGGACCAGTCAACCTGGGCAAAGCCTAG

Translation (103 aa):
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHYCTCLIRVSFHGATPLTQGSWVLYSLSCAGGE
TGLREPGPMVSPRVESHQEGRLGVPGPVNLGKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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