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Report for CCDS6574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6574.1 Public Homo sapiens 9 FANCG 24 110 108 CCDS HistoryNCBI Gene:2189Re-query CCDS DB by CCDS ID:6574.1Re-query CCDS DB by GeneID:2189See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6574.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378643.8 ENSP00000367910.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378643.8Link to Ensembl Protein Viewer:ENSP00000367910.4Re-query CCDS DB by Nucleotide ID:ENST00000378643Re-query CCDS DB by Protein ID:ENSP00000367910
Original member Current member EBI ENST00000448890.2 ENSP00000409607.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448890.2Link to Ensembl Protein Viewer:ENSP00000409607.2Re-query CCDS DB by Nucleotide ID:ENST00000448890Re-query CCDS DB by Protein ID:ENSP00000409607
Original member Current member NCBI NM_004629.2 NP_004620.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004629.2Link to Protein Sequence:NP_004620.1Re-query CCDS DB by Nucleotide ID:NM_004629Re-query CCDS DB by Protein ID:NP_004620Link to BLAST:NP_004620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004620.1 622 O15287 622 100% 0 0

Chromosomal Locations for CCDS 6574.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35074108 35074216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35074371 35074494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35074927 35075082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35075279 35075325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35075465 35075754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35075962 35076028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35076432 35076583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35076724 35076870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35076971 35077101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35077264 35077399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35078141 35078343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35078605 35078736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35079151 35079241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35079441 35079524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGTCCCGCCAGACCACCTCTGTGGGCTCCAGCTGCCTGGACCTGTGGAGGGAAAAGAATGACCGGCTCG
TTCGACAGGCCAAGGTGGCTCAGAACTCCGGTCTGACTCTGAGGCGACAGCAGTTGGCTCAGGATGCACT
GGAAGGGCTCAGAGGGCTCCTCCATAGTCTGCAAGGGCTCCCTGCAGCTGTTCCTGTTCTTCCCTTGGAG
CTGACTGTCACCTGCAACTTCATTATCCTGAGGGCAAGCTTGGCCCAGGGTTTCACAGAGGATCAGGCCC
AGGATATCCAGCGGAGCCTAGAGAGAGTGCTGGAGACACAGGAGCAGCAGGGGCCCAGGTTGGAACAGGG
GCTCAGGGAGCTGTGGGACTCTGTCCTTCGTGCTTCCTGCCTTCTGCCGGAGCTGCTGTCTGCCCTGCAC
CGCCTGGTTGGCCTGCAGGCTGCCCTCTGGTTGAGTGCTGACCGTCTTGGGGACCTGGCCTTGTTACTAG
AGACCCTGAATGGCAGCCAGAGTGGAGCCTCTAAGGATCTGCTGTTACTTCTGAAAACTTGGAGTCCCCC
AGCTGAGGAATTAGATGCTCCATTGACCCTGCAGGATGCCCAGGGATTGAAGGATGTCCTCCTGACAGCA
TTTGCCTACCGCCAAGGTCTCCAGGAGCTGATCACAGGGAACCCAGACAAGGCACTAAGCAGCCTTCATG
AAGCGGCCTCAGGCCTGTGTCCACGGCCTGTGTTGGTCCAGGTGTACACAGCACTGGGGTCCTGTCACCG
TAAGATGGGAAATCCACAGAGAGCACTGTTGTACTTGGTTGCAGCCCTGAAAGAGGGATCAGCCTGGGGT
CCTCCACTTCTGGAGGCCTCTAGGCTCTATCAGCAACTGGGGGACACAACAGCAGAGCTGGAGAGTCTGG
AGCTGCTAGTTGAGGCCTTGAATGTCCCATGCAGTTCCAAAGCCCCGCAGTTTCTCATTGAGGTAGAATT
ACTACTGCCACCACCTGACCTAGCCTCACCCCTTCATTGTGGCACTCAGAGCCAGACCAAGCACATACTA
GCAAGCAGGTGCCTACAGACGGGGAGGGCAGGAGACGCTGCAGAGCATTACTTGGACCTGCTGGCCCTGT
TGCTGGATAGCTCGGAGCCAAGGTTCTCCCCACCCCCCTCCCCTCCAGGGCCCTGTATGCCTGAGGTGTT
TTTGGAGGCAGCGGTAGCACTGATCCAGGCAGGCAGAGCCCAAGATGCCTTGACTCTATGTGAGGAGTTG
CTCAGCCGCACATCATCTCTGCTACCCAAGATGTCCCGGCTGTGGGAAGATGCCAGAAAAGGAACCAAGG
AACTGCCATACTGCCCACTCTGGGTCTCTGCCACCCACCTGCTTCAGGGCCAGGCCTGGGTTCAACTGGG
TGCCCAAAAAGTGGCAATTAGTGAATTTAGCAGGTGCCTCGAGCTGCTCTTCCGGGCCACACCTGAGGAA
AAAGAACAAGGGGCAGCTTTCAACTGTGAGCAGGGATGTAAGTCAGATGCGGCACTGCAGCAGCTTCGGG
CAGCCGCCCTAATTAGTCGTGGACTGGAATGGGTAGCCAGCGGCCAGGATACCAAAGCCTTACAGGACTT
CCTCCTCAGTGTGCAGATGTGCCCAGGTAATCGAGACACTTACTTTCACCTGCTTCAGACTCTGAAGAGG
CTAGATCGGAGGGATGAGGCCACTGCACTCTGGTGGAGGCTGGAGGCCCAAACTAAGGGGTCACATGAAG
ATGCTCTGTGGTCTCTCCCCCTGTACCTAGAAAGCTATTTGAGCTGGATCCGTCCCTCTGATCGTGACGC
CTTCCTTGAAGAATTTCGGACATCTCTGCCAAAGTCTTGTGACCTGTAG

Translation (622 aa):
MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGLPAAVPVLPLE
LTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRELWDSVLRASCLLPELLSALH
RLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLLLKTWSPPAEELDAPLTLQDAQGLKDVLLTA
FAYRQGLQELITGNPDKALSSLHEAASGLCPRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWG
PPLLEASRLYQQLGDTTAELESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHIL
ASRCLQTGRAGDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL
LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCLELLFRATPEE
KEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLSVQMCPGNRDTYFHLLQTLKR
LDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWIRPSDRDAFLEEFRTSLPKSCDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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