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Report for CCDS14445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14445.1 Public Homo sapiens X TBX22 24 110 108 CCDS HistoryNCBI Gene:50945Re-query CCDS DB by CCDS ID:14445.1Re-query CCDS DB by GeneID:50945See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373294.8 ENSP00000362390.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373294.8Link to Ensembl Protein Viewer:ENSP00000362390.5Re-query CCDS DB by Nucleotide ID:ENST00000373294Re-query CCDS DB by Protein ID:ENSP00000362390
Original member Current member EBI ENST00000373296.8 ENSP00000362393.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373296.8Link to Ensembl Protein Viewer:ENSP00000362393.3Re-query CCDS DB by Nucleotide ID:ENST00000373296Re-query CCDS DB by Protein ID:ENSP00000362393
Original member Current member NCBI NM_001109878.2 NP_001103348.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001109878.2Link to Protein Sequence:NP_001103348.1Re-query CCDS DB by Nucleotide ID:NM_001109878Re-query CCDS DB by Protein ID:NP_001103348Link to BLAST:NP_001103348.1
Original member Current member NCBI NM_016954.2 NP_058650.1 Accepted alive Link to Nucleotide Sequence:NM_016954.2Link to Protein Sequence:NP_058650.1Re-query CCDS DB by Nucleotide ID:NM_016954Re-query CCDS DB by Protein ID:NP_058650Link to BLAST:NP_058650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103348.1 520 Q9Y458-1 520 100% 0 0
NP_058650.1 520 Q9Y458-1 520 100% 0 0

Chromosomal Locations for CCDS 14445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 80022270 80022444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80023060 80023240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80024063 80024164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80025603 80025777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80026704 80026868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80027256 80027320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80027991 80028076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 80030498 80031111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCTCTGAGCTCTCGGGCGCGTGCCTTCTCCGTGGAAGCCTTGGTGGGGAGACCCAGCAAAAGAAAAC
TCCAAGACCCAATACAGGCGGAGCAGCCTGAGCTGCGGGAGAAAAAGGGCGGAGAGGAAGAGGAGGAGAG
AAGGAGCAGCGCTGCAGGGAAGAGCGAGCCGCTTGAAAAACAACCTAAGACAGAGCCCTCAACATCTGCT
TCCTCTGGCTGCGGCAGCGACAGCGGCTACGGCAACAGCTCTGAAAGTCTGGAAGAGAAAGATATTCAAA
TGGAGCTTCAAGGATCTGAACTGTGGAAAAGATTCCATGACATCGGGACTGAGATGATCATTACTAAAGC
GGGCAGGCGGATGTTCCCCTCTGTTCGGGTCAAGGTGAAAGGGTTGGATCCAGGGAAGCAGTACCATGTG
GCCATCGATGTGGTGCCGGTGGATTCCAAACGCTATAGGTACGTCTATCACAGCTCACAGTGGATGGTAG
CTGGGAATACAGACCATTTGTGCATCATTCCTAGATTCTATGTTCACCCGGACTCACCCTGCTCGGGAGA
GACCTGGATGCGGCAGATCATCAGCTTTGATCGCATGAAACTCACCAACAATGAGATGGATGACAAAGGC
CACATCATTCTGCAATCCATGCATAAGTACAAACCCCGAGTGCACGTGATAGAGCAAGGCAGCAGTGTTG
ACCTGTCCCAGATTCAGTCCTTGCCCACTGAAGGTGTTAAAACATTCTCCTTTAAAGAAACTGAGTTCAC
CACAGTAACGGCTTACCAAAACCAACAGATTACGAAACTAAAAATAGAAAGAAATCCTTTTGCTAAAGGA
TTTAGAGATACTGGAAGAAACAGGGGTGTATTGGATGGGCTTTTAGAGACCTACCCATGGAGGCCTTCTT
TCACTCTCGATTTTAAAACCTTTGGCGCAGACACACAAAGTGGAAGCAGTGGCTCATCTCCAGTGACCTC
TAGTGGAGGGGCCCCCTCTCCTTTGAACTCCTTACTTTCTCCACTTTGCTTTTCACCTATGTTTCATTTA
CCTACAAGCTCCCTTGGAATGCCCTGTCCAGAGGCATACCTGCCCAATGTCAACCTGCCTCTATGCTACA
AGATTTGTCCAACTAATTTTTGGCAACAGCAACCTCTTGTTTTACCGGCTCCTGAAAGACTAGCAAGCAG
CAACAGTTCTCAGTCTTTAGCCCCACTCATGATGGAAGTGCCTATGTTATCTTCCCTGGGGGTCACCAAT
TCAAAAAGCGGTTCATCTGAAGACTCCAGTGATCAGTATCTACAAGCACCTAATTCTACCAATCAAATGT
TATATGGATTACAGTCACCTGGAAATATTTTTCTGCCAAACTCCATCACCCCAGAAGCACTTAGTTGCTC
CTTTCATCCTTCCTATGACTTTTATAGATACAATTTCTCTATGCCATCTAGACTGATAAGTGGTTCCAAC
CATCTTAAAGTGAATGACGACAGTCAAGTTTCTTTTGGAGAAGGCAAATGTAATCATGTTCATTGGTATC
CAGCAATTAACCATTACCTTTAG

Translation (520 aa):
MALSSRARAFSVEALVGRPSKRKLQDPIQAEQPELREKKGGEEEEERRSSAAGKSEPLEKQPKTEPSTSA
SSGCGSDSGYGNSSESLEEKDIQMELQGSELWKRFHDIGTEMIITKAGRRMFPSVRVKVKGLDPGKQYHV
AIDVVPVDSKRYRYVYHSSQWMVAGNTDHLCIIPRFYVHPDSPCSGETWMRQIISFDRMKLTNNEMDDKG
HIILQSMHKYKPRVHVIEQGSSVDLSQIQSLPTEGVKTFSFKETEFTTVTAYQNQQITKLKIERNPFAKG
FRDTGRNRGVLDGLLETYPWRPSFTLDFKTFGADTQSGSSGSSPVTSSGGAPSPLNSLLSPLCFSPMFHL
PTSSLGMPCPEAYLPNVNLPLCYKICPTNFWQQQPLVLPAPERLASSNSSQSLAPLMMEVPMLSSLGVTN
SKSGSSEDSSDQYLQAPNSTNQMLYGLQSPGNIFLPNSITPEALSCSFHPSYDFYRYNFSMPSRLISGSN
HLKVNDDSQVSFGEGKCNHVHWYPAINHYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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