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Report for CCDS30878.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30878.2 Public Homo sapiens 1 TDRD10 24 110 108 CCDS HistoryNCBI Gene:126668Re-query CCDS DB by CCDS ID:30878.2Re-query CCDS DB by GeneID:126668See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30878.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368482.8 ENSP00000357467.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368482.8Link to Ensembl Protein Viewer:ENSP00000357467.4Re-query CCDS DB by Nucleotide ID:ENST00000368482Re-query CCDS DB by Protein ID:ENSP00000357467
Original member Current member NCBI NM_182499.4 NP_872305.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182499.4Link to Protein Sequence:NP_872305.3Re-query CCDS DB by Nucleotide ID:NM_182499Re-query CCDS DB by Protein ID:NP_872305Link to BLAST:NP_872305.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872305.3 351 Q5VZ19-2 351 100% 0 0

Chromosomal Locations for CCDS 30878.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154506904 154506905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154507241 154507320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154508423 154508481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154520304 154520374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154521323 154521479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154542024 154542066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154542731 154542821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154543963 154544110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154544372 154544517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154544795 154544949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154547409 154547479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154547678 154547710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGTCCTGGAACATTAGTCACCCCCAACTCTCTGATAAACTGTTTGGGAAGAATGGAGTGTTGGAGGAGC
AGAAATCTCCAGGATTCAAGAAAAGAGAGACAGAGGTGTATGTTGGCAATCTTCCACTGGATATTTCTAA
GGAGGAAATTCTGTACCTTCTAAAGGACTTCAACCCTCTTGATGTCCACAAAATCCAGAATGGCTGCAAA
TGCTTTGCATTTGTAGATCTGGGCTCCATGCAGAAAGTGACACTTGCAATCCAGGAGCTGAATGGTAAAC
TCTTCCACAAGCGAAAACTGTTCGTGAATACAAGCAAAAGGCCCCCCAAGAGGACCCCTGATATGATCCA
GCAGCCTCGGGCCCCGCTGGTGTTGGAGAAGGCTTCTGGTGAAGGATTTGGCAAAACCGCCGCTATTATA
CAGCTCGCTCCTAAAGCTCCTGTTGACCTGTGTGAGACAGAGAAACTGAGGGCAGCCTTCTTTGCAGTCC
CGTTGGAAATGAGAGGGTCCTTCCTGGTGCTGCTCCTGAGGGAATGCTTCCGAGACCTGAGCTGGCTGGC
ACTCATCCATAGCGTCCGTGGGGAGGCGGGGCTGCTGGTGACGAGTATCGTCCCGAAGACCCCGTTTTTC
TGGGCTATGCACGTCACTGAGGCTCTGCACCAGAACATGCAGGCTCTGTTTAGCACCCTGGCTCAGGCGG
AGGAGCAGCAGCCCTACCTGGAGGGCTCCACCGTTATGCGCGGGACTCGCTGTCTGGCAGAGTACCACCT
GGGGGATTATGGACACGCCTGGAACAGGTGTTGGGTGCTGGACAGGGTGGACACCTGGGCTGTGGTCATG
TTCATTGATTTTGGACAGTTGGCCACCATCCCTGTGCAGTCTCTGCGCAGCCTAGACAGCGACGACTTCT
GGACCATCCCACCCCTGACTCAGCCATTCATGCTGGAGAAAGACATTTTGAGTTCGTATGAGGTTGTCCA
TCGAATCCTCAAAGGGAAAATCACTGGTGCTTTGAACTCGGCGTTGCACATCCTAAAGTTTGAAGAGTCT
AAATAA

Translation (351 aa):
MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNGCK
CFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKTAAII
QLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECFRDLSWLALIHSVRGEAGLLVTSIVPKTPFF
WAMHVTEALHQNMQALFSTLAQAEEQQPYLEGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVM
FIDFGQLATIPVQSLRSLDSDDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSALHILKFEES
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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