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Report for CCDS1285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1285.1 Public Homo sapiens 1 FIRRM 24 110 108 CCDS HistoryNCBI Gene:55732Re-query CCDS DB by CCDS ID:1285.1Re-query CCDS DB by GeneID:55732See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286031.10 ENSP00000286031.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286031.10Link to Ensembl Protein Viewer:ENSP00000286031.6Re-query CCDS DB by Nucleotide ID:ENST00000286031Re-query CCDS DB by Protein ID:ENSP00000286031
Original member Current member EBI ENST00000359326.9 ENSP00000352276.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359326.9Link to Ensembl Protein Viewer:ENSP00000352276.4Re-query CCDS DB by Nucleotide ID:ENST00000359326Re-query CCDS DB by Protein ID:ENSP00000352276
Original member Current member NCBI NM_001320047.2 NP_001306976.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320047.2Link to Protein Sequence:NP_001306976.1Re-query CCDS DB by Nucleotide ID:NM_001320047Re-query CCDS DB by Protein ID:NP_001306976Link to BLAST:NP_001306976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306976.1 853 Q9NSG2-1 853 100% 0 0

Chromosomal Locations for CCDS 1285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169800906 169800971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169802621 169802725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169803169 169803309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169804075 169804240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169806004 169806088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169807791 169807929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169821679 169821759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169823408 169823472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169827051 169827199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169827711 169827840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169829263 169829449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169830259 169830341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169830696 169830747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169832417 169832506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169836927 169837112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169842417 169842539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169843674 169843769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169847690 169847803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169849500 169849604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169850265 169850345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169851817 169851936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169852790 169852987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2562 nt):
ATGTTTTTACCTCATATGAACCACCTGACATTGGAACAGACTTTCTTTTCACAAGTGTTACCAAAGACTG
TGAAATTATTCGATGACATGATGTATGAATTAACCAGTCAAGCCAGAGGACTGTCAAGCCAAAATTTGGA
AATCCAGACCACTCTAAGGAATATTTTACAAACAATGGTGCAGCTCTTAGGAGCTCTCACAGGATGTGTT
CAGCATATCTGTGCCACACAGGAATCCATCATTTTGGAAAATATTCAGAGTCTCCCCTCCTCAGTCCTTC
ATATAATTAAAAGCACATTTGTGCATTGTAAGAATAGTGAATCTGTGTATTCTGGGTGTTTACACCTAGT
TTCAGACCTTCTCCAGGCTCTTTTCAAGGAGGCCTATTCTCTTCAAAAGCAGTTAATGGAACTGCTGGAC
ATGGTTTGCATGGACCCTTTAGTAGATGACAATGATGATATTTTGAATATGGTAATAGTTATTCATTCTT
TATTGGATATCTGCTCTGTTATTTCCAGTATGGACCATGCATTTCATGCCAATACTTGGAAGTTTATAAT
TAAGCAGAGCCTTAAGCACCAGTCCATAATAAAAAGCCAGTTGAAACACAAAGATATAATTACTAGCTTG
TGTGAAGACATTCTTTTCTCCTTCCATTCTTGTTTACAGTTAGCTGAGCAGATGACACAGTCAGATGCAC
AGGATAATGCTGACTACAGATTATTTCAGAAAACACTCAAATTGTGTCGTTTTTTTGCCAACTCCCTTTT
GCACTACGCTAAGGAATTTCTTCCTTTCCTCTCTGATTCTTGCTGTACTTTGCACCAACTGTATCTTCAG
ATACACAGCAAGTTTCCTCCAAGCCTTTATGCTACCAGGATTTCTAAAGCACACCAAGAGGAAATAGCAG
GTGCTTTCCTAGTGACACTGGATCCACTTATCAGTCAGCTGCTCACATTTCAGCCTTTCATGCAGGTGGT
TTTGGACAGTAAATTAGACCTGCCATGTGAACTGCAGTTTCCACAATGTCTTCTTCTGGTTGTTGTCATG
GATAAGCTGCCATCTCAGCCTAAGGAAGTGCAAACCCTGTGGTGCACAGACAGCCAGGTCTCAGAAACGA
CAACCAGGATATCTCTACTCAAAGCCGTTTTCTACAGTTTTGAGCAGTGTTCTGGTGAACTCTCTCTACC
TGTTCATTTACAGGGATTAAAGAGTAAGGGGAAAGCTGAGGTGGCTGTCACCTTGTATCAGCATGTTTGT
GTTCATCTGTGTACATTTATTACTTCCTTTCATCCCTCACTGTTTGCTGAACTGGATGCTGCTCTGCTGA
ATGCTGTACTTAGTGCTAATATGATCACCTCTTTGTTAGCTATGGATGCATGGTGCTTCCTTGCTCGATA
TGGGACTGCTGAACTGTGTGCACACCATGTCACCATAGTGGCTCATCTGATAAAGTCATGCCCTGGAGAA
TGTTATCAACTCATCAACCTATCAATACTGTTGAAGCGTCTCTTTTTCTTCATGGCACCACCCCATCAGC
TGGAGTTTATCCAGAAATTTTCCCCAAAAGAAGCAGAAAATCTGCCTCTGTGGCAACATATTTCCTTCCA
GGCGTTACCTCCTGAGCTTAGGGAACAAACTGTCCATGAGGTCACCACAGTAGGCACTGCAGAATGCAGG
AAATGGCTGAGCAGGAGTCGTACTTTGGGAGAACTAGAATCTCTGAACACAGTACTGTCTGCTTTGCTTG
CAGTATGTAATTCTGCTGGTGAAGCTTTGGATACAGGAAAACAAACTGCAATTATCGAAGTTGTGAGTCA
GCTTTGGGCTTTTTTAAACATTAAACAGGTAGCAGATCAACCTTATGTTCAACAGACATTCAGCCTTTTA
CTTCCACTGTTGGGATTTTTCATTCAAACTCTAGATCCTAAACTGATACTTCAGGCAGTAACTTTGCAGA
CCTCGCTACTTAAATTAGAGCTTCCTGACTATGTTCGTTTGGCAATGTTGGATTTTGTATCTTCTTTAGG
AAAACTTTTTATACCTGAAGCTATCCAGGACAGAATTCTGCCCAACCTGTCCTGTATGTTTGCCTTACTG
CTAGCTGACAGGAGTTGGCTGCTAGAACAACATACCTTGGAGGCGTTTACTCAGTTCGCTGAGGGAACAA
ATCATGAAGAGATAGTTCCACAGTGTCTCAGTTCTGAAGAAACTAAGAACAAAGTTGTATCCTTTCTGGA
GAAGACTGGGTTTGTAGATGAAACTGAAGCTGCCAAAGTGGAACGTGTGAAACAGGAAAAAGGTATTTTC
TGGGAACCCTTTGCTAATGTGACTGTAGAAGAAGCAAAGAGGTCATCTTTACAGCCTTATGCAAAAAGAG
CTCGTCAGGAGTTCCCCTGGGAAGAAGAGTACAGGTCAGCGCTGCATACAATAGCAGGGGCTTTGGAAGC
AACTGAGTCACTACTCCAAAAGGGTCCTGCTCCAGCCTGGCTTTCAATGGAAATGGAGGCGCTCCAAGAA
AGGATGGATAAGCTAAAACGTTACATACATACTCTAGGGTGA

Translation (853 aa):
MFLPHMNHLTLEQTFFSQVLPKTVKLFDDMMYELTSQARGLSSQNLEIQTTLRNILQTMVQLLGALTGCV
QHICATQESIILENIQSLPSSVLHIIKSTFVHCKNSESVYSGCLHLVSDLLQALFKEAYSLQKQLMELLD
MVCMDPLVDDNDDILNMVIVIHSLLDICSVISSMDHAFHANTWKFIIKQSLKHQSIIKSQLKHKDIITSL
CEDILFSFHSCLQLAEQMTQSDAQDNADYRLFQKTLKLCRFFANSLLHYAKEFLPFLSDSCCTLHQLYLQ
IHSKFPPSLYATRISKAHQEEIAGAFLVTLDPLISQLLTFQPFMQVVLDSKLDLPCELQFPQCLLLVVVM
DKLPSQPKEVQTLWCTDSQVSETTTRISLLKAVFYSFEQCSGELSLPVHLQGLKSKGKAEVAVTLYQHVC
VHLCTFITSFHPSLFAELDAALLNAVLSANMITSLLAMDAWCFLARYGTAELCAHHVTIVAHLIKSCPGE
CYQLINLSILLKRLFFFMAPPHQLEFIQKFSPKEAENLPLWQHISFQALPPELREQTVHEVTTVGTAECR
KWLSRSRTLGELESLNTVLSALLAVCNSAGEALDTGKQTAIIEVVSQLWAFLNIKQVADQPYVQQTFSLL
LPLLGFFIQTLDPKLILQAVTLQTSLLKLELPDYVRLAMLDFVSSLGKLFIPEAIQDRILPNLSCMFALL
LADRSWLLEQHTLEAFTQFAEGTNHEEIVPQCLSSEETKNKVVSFLEKTGFVDETEAAKVERVKQEKGIF
WEPFANVTVEEAKRSSLQPYAKRARQEFPWEEEYRSALHTIAGALEATESLLQKGPAPAWLSMEMEALQE
RMDKLKRYIHTLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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