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Report for CCDS13556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13556.1 Public Homo sapiens 20 OPRL1 24 110 108 CCDS HistoryNCBI Gene:4987Re-query CCDS DB by CCDS ID:13556.1Re-query CCDS DB by GeneID:4987See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13556.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349451.3 ENSP00000336764.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000349451.3Link to Ensembl Protein Viewer:ENSP00000336764.3Re-query CCDS DB by Nucleotide ID:ENST00000349451Re-query CCDS DB by Protein ID:ENSP00000336764
Original member Current member EBI ENST00000336866.7 ENSP00000336843.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336866.7Link to Ensembl Protein Viewer:ENSP00000336843.2Re-query CCDS DB by Nucleotide ID:ENST00000336866Re-query CCDS DB by Protein ID:ENSP00000336843
Original member Current member EBI ENST00000355631.8 ENSP00000347848.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355631.8Link to Ensembl Protein Viewer:ENSP00000347848.4Re-query CCDS DB by Nucleotide ID:ENST00000355631Re-query CCDS DB by Protein ID:ENSP00000347848
Original member Current member NCBI NM_000913.6 NP_000904.1 Accepted alive Link to Nucleotide Sequence:NM_000913.6Link to Protein Sequence:NP_000904.1Re-query CCDS DB by Nucleotide ID:NM_000913Re-query CCDS DB by Protein ID:NP_000904Link to BLAST:NP_000904.1
Original member Current member NCBI NM_001200019.2 NP_001186948.1 Accepted alive Link to Nucleotide Sequence:NM_001200019.2Link to Protein Sequence:NP_001186948.1Re-query CCDS DB by Nucleotide ID:NM_001200019Re-query CCDS DB by Protein ID:NP_001186948Link to BLAST:NP_001186948.1
Original member Current member NCBI NM_182647.4 NP_872588.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182647.4Link to Protein Sequence:NP_872588.1Re-query CCDS DB by Nucleotide ID:NM_182647Re-query CCDS DB by Protein ID:NP_872588Link to BLAST:NP_872588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000904.1 370 P41146-1 370 100% 0 0
NP_001186948.1 370 P41146-1 370 100% 0 0
NP_872588.1 370 P41146-1 370 100% 0 0

Chromosomal Locations for CCDS 13556.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64092721 64092953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64097802 64098157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64098276 64098799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGAGCCCCTCTTCCCCGCGCCGTTCTGGGAGGTTATCTACGGCAGCCACCTTCAGGGCAACCTGTCCC
TCCTGAGCCCCAACCACAGTCTGCTGCCCCCGCATCTGCTGCTCAATGCCAGCCACGGCGCCTTCCTGCC
CCTCGGGCTCAAGGTCACCATCGTGGGGCTCTACCTGGCCGTGTGTGTCGGAGGGCTCCTGGGGAACTGC
CTTGTCATGTACGTCATCCTCAGGCACACCAAAATGAAGACAGCCACCAATATTTACATCTTTAACCTGG
CCCTGGCCGACACTCTGGTCCTGCTGACGCTGCCCTTCCAGGGCACGGACATCCTCCTGGGCTTCTGGCC
GTTTGGGAATGCGCTGTGCAAGACAGTCATTGCCATTGACTACTACAACATGTTCACCAGCACCTTCACC
CTAACTGCCATGAGTGTGGATCGCTATGTAGCCATCTGCCACCCCATCCGTGCCCTCGACGTCCGCACGT
CCAGCAAAGCCCAGGCTGTCAATGTGGCCATCTGGGCCCTGGCCTCTGTTGTCGGTGTTCCCGTTGCCAT
CATGGGCTCGGCACAGGTCGAGGATGAAGAGATCGAGTGCCTGGTGGAGATCCCTACCCCTCAGGATTAC
TGGGGCCCGGTGTTTGCCATCTGCATCTTCCTCTTCTCCTTCATCGTCCCCGTGCTCGTCATCTCTGTCT
GCTACAGCCTCATGATCCGGCGGCTCCGTGGAGTCCGCCTGCTCTCGGGCTCCCGAGAGAAGGACCGGAA
CCTGCGGCGCATCACTCGGCTGGTGCTGGTGGTAGTGGCTGTGTTCGTGGGCTGCTGGACGCCTGTCCAG
GTCTTCGTGCTGGCCCAAGGGCTGGGGGTTCAGCCGAGCAGCGAGACTGCCGTGGCCATTCTGCGCTTCT
GCACGGCCCTGGGCTACGTCAACAGCTGCCTCAACCCCATCCTCTACGCCTTCCTGGATGAGAACTTCAA
GGCCTGCTTCCGCAAGTTCTGCTGTGCATCTGCCCTGCGCCGGGACGTGCAGGTGTCTGACCGCGTGCGC
AGCATTGCCAAGGACGTGGCCCTGGCCTGCAAGACCTCTGAGACGGTACCGCGGCCCGCATGA

Translation (370 aa):
MEPLFPAPFWEVIYGSHLQGNLSLLSPNHSLLPPHLLLNASHGAFLPLGLKVTIVGLYLAVCVGGLLGNC
LVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT
LTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDY
WGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQ
VFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALRRDVQVSDRVR
SIAKDVALACKTSETVPRPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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