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Report for CCDS5678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5678.1 Public Homo sapiens 7 TRIM4 24 110 108 CCDS HistoryNCBI Gene:89122Re-query CCDS DB by CCDS ID:5678.1Re-query CCDS DB by GeneID:89122See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349062.7 ENSP00000275736.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349062.7Link to Ensembl Protein Viewer:ENSP00000275736.4Re-query CCDS DB by Nucleotide ID:ENST00000349062Re-query CCDS DB by Protein ID:ENSP00000275736
Original member Current member NCBI NM_033091.3 NP_149082.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033091.3Link to Protein Sequence:NP_149082.1Re-query CCDS DB by Nucleotide ID:NM_033091Re-query CCDS DB by Protein ID:NP_149082Link to BLAST:NP_149082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149082.1 474 Q9C037-2 474 100% 0 0

Chromosomal Locations for CCDS 5678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99892163 99892746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99903218 99903315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99903576 99903598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99908582 99908812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99909565 99909660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99919009 99919401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGAAGCTGAGGACATCCAGGAGGAGTTGACCTGCCCCATCTGCCTGGACTATTTCCAGGACCCGGTGT
CCATCGAGTGCGGCCACAACTTCTGCCGCGGCTGCCTGCACCGCAACTGGGCGCCGGGCGGCGGCCCGTT
CCCCTGCCCCGAATGTCGGCACCCATCGGCGCCCGCCGCGCTGCGACCCAACTGGGCCCTGGCCAGGCTG
ACTGAGAAGACGCAGCGCCGGCGCCTGGGCCCCGTGCCCCCGGGCCTGTGCGGCCGCCACTGGGAGCCGC
TGCGGCTCTTCTGCGAGGACGACCAGCGGCCAGTGTGCCTGGTGTGCAGGGAGTCCCAGGAGCACCAGAC
TCACGCCATGGCACCCATCGACGAGGCCTTCGAGAGCTACCGGGAGAAACTTCTTAAGTCTCAGCGTAAT
CTCGTGGCCAAGATGAAGAAAGTCATGCATTTACAGGATGTAGAAGTGAAGAACGCCACACAGTGGAAGG
ATAAGATAAAGAGTCAGCGAATGAGAATCAGCACGGAGTTTTCAAAGCTGCACAACTTCCTGGTTGAAGA
AGAGGACCTGTTTCTTCAGAGATTGAACAAAGAAGAAGAAGAGACGAAGAAGAAGCTGAATGAGAACACG
TTAAAACTCAATCAAACTATCGCTTCATTGAAGAAGCTCATCTTAGAGGTGGGGGAGAAGAGCCAGGCTC
CCACCCTGGAGCTGCTTCAGAATCCAAAAGAAGTGTTGACCAGGAGTGAGATCCAGGATGTGAACTATTC
TCTTGAAGCTGTAAAGGTGAAGACAGTGTGCCAGATACCATTGATGAAGGAAATGCTAAAGCGATTCCAA
GTGGCTGTAAACCTAGCTGAAGACACAGCTCATCCCAAACTCGTCTTCTCCCAGGAAGGGAGATACGTGA
AAAATACAGCATCAGCCAGTTCTTGGCCAGTGTTTTCTTCAGCATGGAACTACTTTGCTGGATGGAGGAA
TCCTCAGAAGACTGCTTTTGTAGAGAGATTTCAGCACTTACCCTGTGTTCTGGGAAAAAACGTTTTCACC
TCAGGGAAACATTACTGGGAAGTTGAGAGTAGAGATAGTCTGGAGGTTGCTGTTGGGGTGTGTCGGGAGG
ACGTCATGGGAATTACTGATCGTTCAAAAATGTCCCCAGATGTGGGCATCTGGGCGATTTATTGGAGTGC
TGCTGGCTATTGGCCCTTGATAGGCTTCCCTGGAACTCCCACCCAGCAAGAGCCAGCTCTCCACCGAGTG
GGGGTTTACCTGGATCGTGGGACTGGGAATGTCTCCTTCTACAGCGCTGTGGACGGAGTGCACCTGCACA
CCTTTTCTTGTTCTTCTGTCTCACGCCTCCGGCCATTTTTTTGGTTGAGTCCATTAGCATCTTTAGTCAT
TCCACCAGTGACTGATAGGAAATGA

Translation (474 aa):
MEAEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAALRPNWALARL
TEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYREKLLKSQRN
LVAKMKKVMHLQDVEVKNATQWKDKIKSQRMRISTEFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENT
LKLNQTIASLKKLILEVGEKSQAPTLELLQNPKEVLTRSEIQDVNYSLEAVKVKTVCQIPLMKEMLKRFQ
VAVNLAEDTAHPKLVFSQEGRYVKNTASASSWPVFSSAWNYFAGWRNPQKTAFVERFQHLPCVLGKNVFT
SGKHYWEVESRDSLEVAVGVCREDVMGITDRSKMSPDVGIWAIYWSAAGYWPLIGFPGTPTQQEPALHRV
GVYLDRGTGNVSFYSAVDGVHLHTFSCSSVSRLRPFFWLSPLASLVIPPVTDRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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