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Report for CCDS43353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43353.1 Public Homo sapiens 5 FAM170A 24 110 108 CCDS HistoryNCBI Gene:340069Re-query CCDS DB by CCDS ID:43353.1Re-query CCDS DB by GeneID:340069See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 43353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335286.10 ENSP00000334285.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000335286.10Link to Ensembl Protein Viewer:ENSP00000334285.6Re-query CCDS DB by Nucleotide ID:ENST00000335286Re-query CCDS DB by Protein ID:ENSP00000334285
Original member Current member NCBI NM_182761.4 NP_877438.2 Accepted alive Link to Nucleotide Sequence:NM_182761.4Link to Protein Sequence:NP_877438.2Re-query CCDS DB by Nucleotide ID:NM_182761Re-query CCDS DB by Protein ID:NP_877438Link to BLAST:NP_877438.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877438.2 329 A1A519-2 329 100% 0 0

Chromosomal Locations for CCDS 43353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119629769 119629838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119632748 119632888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119633960 119634734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119635031 119635034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGAAACGACGACAAAAGAGGAAACATTTGGAAAATGAAGAGTCCCAGGAAACCGCTGAGAAGGGAGGAG
GAATGTCAAAGTCCCAAGAGGATGCCCTGCAGCCTGGATCCACTAGAGTGGCCAAAGGCTGGAGCCAAGG
GGTGGGAGAAGTTACTTCTACCTCCGAATACTGCTCCTGCGTTTCTTCTTCACGCAAGCTCATCCACAGT
GGAATCCAGAGAATACATCGAGACAGCCCCCAGCCTCAATCACCCCTGGCCCAGGTTCAGGAACGAGGAG
AGACTCCTCCCCGCTCACAACATGTCTCCTTGTCGTCCTATTCATCCTATAAGACTTGTGTGTCCTCTCT
GTGTGTAAACAAAGAGGAAAGGGGCATGAAAATATACTACATGCAGGTACAAATGAACAAAGGTGTGGCT
GTCTCCTGGGAGACAGAGGAAACTTTGGAGTCCTTAGAAAAGCAGCCAAGGATGGAAGAAGTGACCCTTT
CTGAGGTTGTGAGGGTAGGTACTCCCCCCTCTGATGTGTCCACCAGAAACCTCCTGTCTGACAGTGAGCC
CAGTGGGGAGGAGAAAGAGCATGAGGAAAGGACAGAATCAGACAGCCTGCCAGGCTCACCCACCGTTGAG
GACACACCCAGAGCCAAGACTCCTGACTGGCTGGTGACCATGGAGAACGGCTTCAGGTGCATGGCCTGCT
GCCGGGTGTTCACCACCATGGAAGCCCTCCAGGAGCATGTGCAGTTTGGGATCAGAGAGGGCTTCAGCTG
CCACGTCTTTCATCTCACCATGGCTCAGCTGACAGGCAACATGGAATCAGAGAGCACCCAAGATGAGCAG
GAGGAGGAAAATGGAAATGAGAAGGAGGAGGAAGAGAAACCAGAAGCAAAGGAGGAGGAGGGGCAGCCCA
CAGAAGAAGACCTTGGCCTGAGGAGATCCTGGAGCCAATGTCCAGGCTGTGTGTTTCATTCTCCAAAGGA
CAGGAACTGA

Translation (329 aa):
MKRRQKRKHLENEESQETAEKGGGMSKSQEDALQPGSTRVAKGWSQGVGEVTSTSEYCSCVSSSRKLIHS
GIQRIHRDSPQPQSPLAQVQERGETPPRSQHVSLSSYSSYKTCVSSLCVNKEERGMKIYYMQVQMNKGVA
VSWETEETLESLEKQPRMEEVTLSEVVRVGTPPSDVSTRNLLSDSEPSGEEKEHEERTESDSLPGSPTVE
DTPRAKTPDWLVTMENGFRCMACCRVFTTMEALQEHVQFGIREGFSCHVFHLTMAQLTGNMESESTQDEQ
EEENGNEKEEEEKPEAKEEEGQPTEEDLGLRRSWSQCPGCVFHSPKDRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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