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Report for CCDS86637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86637.1 Public Homo sapiens 17 OTOP3 24 110 108 CCDS HistoryNCBI Gene:347741Re-query CCDS DB by CCDS ID:86637.1Re-query CCDS DB by GeneID:347741See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86637.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328801.6 ENSP00000328090.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328801.6Link to Ensembl Protein Viewer:ENSP00000328090.5Re-query CCDS DB by Nucleotide ID:ENST00000328801Re-query CCDS DB by Protein ID:ENSP00000328090
Original member Current member NCBI NM_001272005.2 NP_001258934.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001272005.2Link to Protein Sequence:NP_001258934.1Re-query CCDS DB by Nucleotide ID:NM_001272005Re-query CCDS DB by Protein ID:NP_001258934Link to BLAST:NP_001258934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258934.1 578 Q7RTS5-2 578 100% 0 0

Chromosomal Locations for CCDS 86637.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74935922 74935940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74941393 74941809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74941901 74942037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74943286 74943344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74943606 74943724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74946661 74947475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74949246 74949416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGCCTCTCCCGGCCTCAGCCCCTGCTGAGGCTACACCCATGCCTTCTTCAGAAGCACAGGAGACTGAAG
CAGCCCCGGAGAAGGAGAACCGAGTGGATGTGGGGGCCGAGGAGAGAGCGGCCGCCACCCGGCCCCGGCA
GAAGTCCTGGCTGGTGAGGCATTTCTCTCTGCTGCTGCGGCGGGACCGGCAGGCCCAGAAGGCTGGACAA
CTCTTCTCGGGGCTCCTGGCCCTGAATGTGGTGTTCCTGGGTGGCGCCTTCATCTGCAGCATGATCTTCA
ACAAGGTGGCCGTCACTCTGGGTGACGTGTGGATCCTGCTGGCCACGCTGAAGGTCCTCTCCCTGCTTTG
GCTTCTCTACTATGTGGCAAGCACCACCCGCCGACCACACGCCGTGCTCTACCAAGATCCCCACGCGGGG
CCCCTCTGGGTGCGGGGTTCCCTAGTGCTCTTCGGCAGCTGCACCTTCTGCCTCAACATCTTCCGAGTGG
GCTACGATGTGAGCCACATCCGCTGCAAGTCACAGCTGGACCTTGTCTTCTCTGTCATCGAGATGGTCTT
CATCGGCGTCCAGACCTGGGTGCTCTGGAAACACTGCAAAGACTGTGTTCGGGTCCAGACCAACTTCACT
AGGTGTGGCCTGATGCTGACCCTGGCCACAAACCTGCTGCTGTGGGTTCTGGCCGTTACCAATGACTCCA
TGCACCGAGAGATCGAAGCTGAGCTTGGCATCCTCATGGAAAAATCCACAGGCAATGAGACCAACACCTG
TCTGTGCCTCAATGCCACCGCGTGTGAAGCTTTCCGGAGAGGCTTCCTGATGCTCTACCCCTTCAGCACT
GAGTACTGCCTCATCTGCTGTGCTGTGCTGTTTGTCATGTGGAAGAACGTGGGCCGCCACGTGGCACCCC
ACATGGGTGCCCACCCTGCCACCGCACCCTTCCACCTGCACGGGGCCATCTTCGGGCCGCTGCTGGGCCT
GCTGGTGCTGCTGGCAGGTGTGTGCGTCTTTGTGCTCTTCCAAATCGAGGCCAGTGGCCCTGCCATTGCT
TGCCAGTACTTCACCCTCTACTATGCCTTCTATGTGGCTGTGCTGCCCACCATGAGTCTGGCGTGCCTGG
CGGGCACAGCCATACACGGGCTGGAGGAGAGAGAGCTGGACACGGTCAAGAACCCTACCCGCAGCCTGGA
TGTGGTGCTGCTAATGGGTGCTGCACTGGGCCAGATGGGCATCGCCTATTTCTCCATCGTGGCCATTGTG
GCCAAGCGCCCGCATGAGCTGCTCAACCGCCTCATCCTGGCCTACTCGCTGCTGCTCATCCTGCAGCACA
TCGCTCAGAACCTCTTCATCATCGAGGGCCTGCACCGGCGCCCACTCTGGGAGACAGTTCCCGAGGGCCT
GGCAGGAAAGCAGGAGGCTGAGCCTCCCCGCAGAGGCTCCTTGCTGGAGCTGGGCCAGGGCCTGCAGCGG
GCCTCACTGGCCTACATCCACTCCTACAGCCACCTCAACTGGAAGCGGAGGGCACTCAAGGAGATCTCAC
TCTTCCTCATCCTCTGCAATATCACACTGTGGATGATGCCTGCATTTGGCATACACCCGGAGTTTGAGAA
CGGGCTAGAAAAGGATTTCTACGGCTACCAGATATGGTTCGCCATCGTCAACTTCGGCCTGCCTCTGGGG
GTCTTCTACCGCATGCACTCTGTGGGAGGCCTGGTGGAGGTCTACCTGGGGGCCTGA

Translation (578 aa):
MPLPASAPAEATPMPSSEAQETEAAPEKENRVDVGAEERAAATRPRQKSWLVRHFSLLLRRDRQAQKAGQ
LFSGLLALNVVFLGGAFICSMIFNKVAVTLGDVWILLATLKVLSLLWLLYYVASTTRRPHAVLYQDPHAG
PLWVRGSLVLFGSCTFCLNIFRVGYDVSHIRCKSQLDLVFSVIEMVFIGVQTWVLWKHCKDCVRVQTNFT
RCGLMLTLATNLLLWVLAVTNDSMHREIEAELGILMEKSTGNETNTCLCLNATACEAFRRGFLMLYPFST
EYCLICCAVLFVMWKNVGRHVAPHMGAHPATAPFHLHGAIFGPLLGLLVLLAGVCVFVLFQIEASGPAIA
CQYFTLYYAFYVAVLPTMSLACLAGTAIHGLEERELDTVKNPTRSLDVVLLMGAALGQMGIAYFSIVAIV
AKRPHELLNRLILAYSLLLILQHIAQNLFIIEGLHRRPLWETVPEGLAGKQEAEPPRRGSLLELGQGLQR
ASLAYIHSYSHLNWKRRALKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYQIWFAIVNFGLPLG
VFYRMHSVGGLVEVYLGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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