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Report for CCDS46913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46913.1 Public Homo sapiens 3 ATP2C1 24 110 108 CCDS HistoryNCBI Gene:27032Re-query CCDS DB by CCDS ID:46913.1Re-query CCDS DB by GeneID:27032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46913.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328560.12 ENSP00000329664.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328560.12Link to Ensembl Protein Viewer:ENSP00000329664.8Re-query CCDS DB by Nucleotide ID:ENST00000328560Re-query CCDS DB by Protein ID:ENSP00000329664
Original member Current member EBI ENST00000533801.6 ENSP00000432956.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533801.6Link to Ensembl Protein Viewer:ENSP00000432956.3Re-query CCDS DB by Nucleotide ID:ENST00000533801Re-query CCDS DB by Protein ID:ENSP00000432956
Original member Current member NCBI NM_001001485.3 NP_001001485.1 Accepted alive Link to Nucleotide Sequence:NM_001001485.3Link to Protein Sequence:NP_001001485.1Re-query CCDS DB by Nucleotide ID:NM_001001485Re-query CCDS DB by Protein ID:NP_001001485Link to BLAST:NP_001001485.1
Original member Current member NCBI NM_001199185.2 NP_001186114.1 Accepted alive Link to Nucleotide Sequence:NM_001199185.2Link to Protein Sequence:NP_001186114.1Re-query CCDS DB by Nucleotide ID:NM_001199185Re-query CCDS DB by Protein ID:NP_001186114Link to BLAST:NP_001186114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001485.1 888 P98194-2 888 100% 0 0
NP_001186114.1 888 P98194-2 888 100% 0 0

Chromosomal Locations for CCDS 46913.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 130894770 130894775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130930416 130930526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130932022 130932138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130934622 130934711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130937428 130937463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130940630 130940691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130941591 130941699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130953821 130953976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130955012 130955080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130956104 130956179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130959275 130959341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130963971 130964095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130964948 130965045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967145 130967240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130967330 130967419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130969292 130969396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130975332 130975488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130979249 130979419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130980582 130980679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130992951 130993001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130993932 130994098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996043 130996111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130996680 130996796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130997606 130997753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130998294 130998389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 130999518 130999659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131016152 131016189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGAAGGTTGCACGTTTTCAAAAAATACCTAATGGTGAAAATGAGACAATGATTCCTGTATTGACATCAA
AAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGCATTCTCCAAGCTGATCTTCAGAATGGTCTAAA
CAAATGTGAAGTTAGTCATAGGCGAGCCTTTCATGGCTGGAATGAGTTTGATATTAGTGAAGATGAGCCA
CTGTGGAAGAAGTATATTTCTCAGTTTAAAAATCCCCTTATTATGCTGCTTCTGGCTTCTGCAGTCATCA
GTGTTTTAATGCATCAGTTTGATGATGCCGTCAGTATCACTGTGGCAATACTTATCGTTGTTACAGTTGC
CTTTGTTCAGGAATATCGTTCAGAAAAATCTCTTGAAGAATTGAGTAAACTTGTGCCACCAGAATGCCAT
TGTGTGCGTGAAGGAAAATTGGAGCATACACTTGCCCGAGACTTGGTTCCAGGTGATACAGTTTGCCTTT
CTGTTGGGGATAGAGTTCCTGCTGACTTACGCTTGTTTGAGGCTGTGGATCTTTCCATTGATGAGTCCAG
CTTGACAGGTGAGACAACGCCTTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGAGATCTT
GCATCGAGAAGTAACATTGCCTTTATGGGAACACTGGTCAGATGTGGCAAAGCAAAGGGTGTTGTCATTG
GAACAGGAGAAAATTCTGAATTTGGGGAGGTTTTTAAAATGATGCAAGCAGAAGAGGCACCAAAAACCCC
TCTGCAGAAGAGCATGGACCTCTTAGGAAAACAACTTTCCTTTTACTCCTTTGGTATAATAGGAATCATC
ATGTTGGTTGGCTGGTTACTGGGAAAAGATATCCTGGAAATGTTTACTATTAGTGTAAGTTTGGCTGTAG
CAGCAATTCCTGAAGGTCTCCCCATTGTGGTCACAGTGACGCTAGCTCTTGGTGTTATGAGAATGGTGAA
GAAAAGGGCCATTGTGAAAAAGCTGCCTATTGTTGAAACTCTGGGCTGCTGTAATGTGATTTGTTCAGAT
AAAACTGGAACACTGACGAAGAATGAAATGACTGTTACTCACATATTTACTTCAGATGGTCTGCATGCTG
AGGTTACTGGAGTTGGCTATAATCAATTTGGGGAAGTGATTGTTGATGGTGATGTTGTTCATGGATTCTA
TAACCCAGCTGTTAGCAGAATTGTTGAGGCGGGCTGTGTGTGCAATGATGCTGTAATTAGAAACAATACT
CTAATGGGGAAGCCAACAGAAGGGGCCTTAATTGCTCTTGCAATGAAGATGGGTCTTGATGGACTTCAAC
AAGACTACATCAGAAAAGCTGAATACCCTTTTAGCTCTGAGCAAAAGTGGATGGCTGTTAAGTGTGTACA
CCGAACACAGCAGGACAGACCAGAGATTTGTTTTATGAAAGGTGCTTACGAACAAGTAATTAAGTACTGT
ACTACATACCAGAGCAAAGGGCAGACCTTGACACTTACTCAGCAGCAGAGAGATGTGTACCAACAAGAGA
AGGCACGCATGGGCTCAGCGGGACTCAGAGTTCTTGCTTTGGCTTCTGGTCCTGAACTGGGACAGCTGAC
ATTTCTTGGCTTGGTGGGAATCATTGATCCACCTAGAACTGGTGTGAAAGAAGCTGTTACAACACTCATT
GCCTCAGGAGTATCAATAAAAATGATTACTGGAGATTCACAGGAGACTGCAGTTGCAATCGCCAGTCGTC
TGGGATTGTATTCCAAAACTTCCCAGTCAGTCTCAGGAGAAGAAATAGATGCAATGGATGTTCAGCAGCT
TTCACAAATAGTACCAAAGGTTGCAGTATTTTACAGAGCTAGCCCAAGGCACAAGATGAAAATTATTAAG
TCGCTACAGAAGAACGGTTCAGTTGTAGCCATGACAGGAGATGGAGTAAATGATGCAGTTGCTCTGAAGG
CTGCAGACATTGGAGTTGCGATGGGCCAGACTGGTACAGATGTTTGCAAAGAGGCAGCAGACATGATCCT
AGTGGATGATGATTTTCAAACCATAATGTCTGCAATCGAAGAGGGTAAAGGGATTTATAATAACATTAAA
AATTTCGTTAGATTCCAGCTGAGCACGAGTATAGCAGCATTAACTTTAATCTCATTGGCTACATTAATGA
ACTTTCCTAATCCTCTCAATGCCATGCAGATTTTGTGGATCAATATTATTATGGATGGACCCCCAGCTCA
GAGCCTTGGAGTAGAACCAGTGGATAAAGATGTCATTCGTAAACCTCCTCGCAACTGGAAAGACAGCATT
TTGACTAAAAACTTGATACTTAAAATACTTGTTTCATCAATAATCATTGTTTGTGGGACTTTGTTTGTCT
TCTGGCGTGAGCTACGAGACAATGTGATTACACCTCGAGACACAACAATGACCTTCACATGCTTTGTGTT
TTTTGACATGTTCAATGCACTAAGTTCCAGATCCCAGACCAAGTCTGTGTTTGAGATTGGACTCTGCAGT
AATAGAATGTTTTGCTATGCAGTTCTTGGATCCATCATGGGACAATTACTAGTTATTTACTTTCCTCCGC
TTCAGAAGGTTTTTCAGACTGAGAGCCTAAGCATACTGGGTCTGGCTCTGGGAGAGGAGTGGACAGCAGC
TGGTTGA

Translation (888 aa):
MKVARFQKIPNGENETMIPVLTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEP
LWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECH
CVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDL
ASRSNIAFMGTLVRCGKAKGVVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGIIGII
MLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKKLPIVETLGCCNVICSD
KTGTLTKNEMTVTHIFTSDGLHAEVTGVGYNQFGEVIVDGDVVHGFYNPAVSRIVEAGCVCNDAVIRNNT
LMGKPTEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKCVHRTQQDRPEICFMKGAYEQVIKYC
TTYQSKGQTLTLTQQQRDVYQQEKARMGSAGLRVLALASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLI
ASGVSIKMITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAMDVQQLSQIVPKVAVFYRASPRHKMKIIK
SLQKNGSVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIK
NFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSI
LTKNLILKILVSSIIIVCGTLFVFWRELRDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCS
NRMFCYAVLGSIMGQLLVIYFPPLQKVFQTESLSILGLALGEEWTAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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