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Report for CCDS3543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3543.1 Public Homo sapiens 4 AMBN 24 110 108 CCDS HistoryNCBI Gene:258Re-query CCDS DB by CCDS ID:3543.1Re-query CCDS DB by GeneID:258See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322937.10 ENSP00000313809.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322937.10Link to Ensembl Protein Viewer:ENSP00000313809.6Re-query CCDS DB by Nucleotide ID:ENST00000322937Re-query CCDS DB by Protein ID:ENSP00000313809
Original member Current member NCBI NM_016519.6 NP_057603.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016519.6Link to Protein Sequence:NP_057603.1Re-query CCDS DB by Nucleotide ID:NM_016519Re-query CCDS DB by Protein ID:NP_057603Link to BLAST:NP_057603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057603.1 447 Q9NP70-1 447 100% 0 0

Chromosomal Locations for CCDS 3543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70592359 70592373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70593327 70593395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70596999 70597049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70598356 70598403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70599536 70599646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70601418 70601654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70602624 70602662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70602798 70602836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70602972 70603010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70603260 70603319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70603416 70603460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70603877 70603921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70606185 70606730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGTCAGCATCTAAGATTCCACTTTTCAAAATGAAGGACCTGATACTGATCCTATGCCTCCTGGAAATGA
GTTTTGCAGTGCCGTTCTTTCCTCAGCAATCTGGAACACCGGGTATGGCTAGTTTGAGCCTTGAGACAAT
GAGACAGTTGGGAAGTCTGCAGAGATTAAACACACTTTCTCAGTATTCTAGATACGGCTTTGGAAAATCA
TTTAATTCTTTGTGGATGCACGGTCTCCTCCCACCACATTCCTCTCTTCCATGGATGAGGCCAAGAGAAC
ATGAAACTCAACAGTATGAATATTCTTTGCCTGTGCATCCCCCACCTCTCCCATCACAGCCATCCTTGAA
GCCTCAACAGCCAGGACTGAAACCTTTTCTCCAGTCTGCTGCTGCAACCACCAACCAGGCCACAGCACTG
AAAGAAGCACTTCAGCCTCCAATTCACCTGGGACATCTGCCCTTGCAGGAAGGAGAACTGCCTCTGGTTC
AGCAGCAGGTGGCACCATCAGATAAGCCACCAAAGCCTGAGCTCCCAGGAGTAGATTTTGCTGATCCACA
AGGTCCATCACTCCCAGGAATGGATTTTCCTGATCCACAAGGTCCATCACTCCCAGGATTGGATTTTGCT
GATCCACAAGGTTCAACAATTTTCCAAATAGCCCGTTTGATTTCTCACGGACCAATGCCACAAAATAAAC
AATCTCCACTTTATCCAGGAATGTTGTACGTGCCTTTTGGAGCAAATCAATTGAATGCCCCTGCCAGACT
TGGCATCATGAGTTCAGAAGAAGTGGCAGGCGGGAGAGAAGACCCAATGGCCTATGGAGCCATGTTTCCA
GGATTTGGAGGCATGAGGCCCGGCTTTGAGGGAATGCCCCACAACCCAGCTATGGGCGGTGACTTCACTC
TGGAATTTGACTCCCCAGTGGCTGCCACCAAAGGCCCTGAGAACGAAGAAGGAGGTGCACAAGGCTCCCC
TATGCCGGAGGCCAACCCAGACAATCTAGAAAACCCAGCTTTCCTTACAGAGCTAGAACCTGCTCCCCAC
GCAGGGCTCCTTGCTCTCCCTAAGGATGACATTCCCGGCCTGCCAAGGAGCCCTTCAGGGAAGATGAAGG
GACTCCCCAGCGTCACCCCAGCAGCTGCTGACCCACTGATGACCCCTGAATTAGCTGATGTTTATAGGAC
CTACGATGCTGACATGACCACATCCGTGGATTTCCAGGAAGAAGCAACCATGGATACCACGATGGCCCCA
AACTCTCTGCAAACATCCATGCCAGGAAACAAAGCCCAGGAGCCCGAGATGATGCATGACGCATGGCATT
TCCAAGAGCCCTGA

Translation (447 aa):
MSASKIPLFKMKDLILILCLLEMSFAVPFFPQQSGTPGMASLSLETMRQLGSLQRLNTLSQYSRYGFGKS
FNSLWMHGLLPPHSSLPWMRPREHETQQYEYSLPVHPPPLPSQPSLKPQQPGLKPFLQSAAATTNQATAL
KEALQPPIHLGHLPLQEGELPLVQQQVAPSDKPPKPELPGVDFADPQGPSLPGMDFPDPQGPSLPGLDFA
DPQGSTIFQIARLISHGPMPQNKQSPLYPGMLYVPFGANQLNAPARLGIMSSEEVAGGREDPMAYGAMFP
GFGGMRPGFEGMPHNPAMGGDFTLEFDSPVAATKGPENEEGGAQGSPMPEANPDNLENPAFLTELEPAPH
AGLLALPKDDIPGLPRSPSGKMKGLPSVTPAAADPLMTPELADVYRTYDADMTTSVDFQEEATMDTTMAP
NSLQTSMPGNKAQEPEMMHDAWHFQEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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