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Report for CCDS32966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32966.1 Public Homo sapiens 19 SLC25A42 24 110 108 CCDS HistoryNCBI Gene:284439Re-query CCDS DB by CCDS ID:32966.1Re-query CCDS DB by GeneID:284439See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318596.8 ENSP00000326693.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318596.8Link to Ensembl Protein Viewer:ENSP00000326693.6Re-query CCDS DB by Nucleotide ID:ENST00000318596Re-query CCDS DB by Protein ID:ENSP00000326693
Original member Current member NCBI NM_001321544.2 NP_001308473.1 Accepted alive Link to Nucleotide Sequence:NM_001321544.2Link to Protein Sequence:NP_001308473.1Re-query CCDS DB by Nucleotide ID:NM_001321544Re-query CCDS DB by Protein ID:NP_001308473Link to BLAST:NP_001308473.1
Original member Current member NCBI NM_178526.5 NP_848621.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178526.5Link to Protein Sequence:NP_848621.2Re-query CCDS DB by Nucleotide ID:NM_178526Re-query CCDS DB by Protein ID:NP_848621Link to BLAST:NP_848621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308473.1 318 Q86VD7 318 100% 0 0
NP_848621.2 318 Q86VD7 318 100% 0 0

Chromosomal Locations for CCDS 32966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19096125 19096205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19101781 19101886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19104913 19104938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19105561 19105727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19106269 19106385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19107894 19108045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19110569 19110876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCG
TCTCATCAAAGCGTGACCACAGGCAAGTGCTCAGCTCCCTGCTGTCTGGGGCCCTGGCTGGTGCCCTTGC
CAAAACAGCGGTAGCTCCCCTGGACCGAACCAAAATCATCTTCCAAGTGTCTTCAAAAAGATTTTCTGCC
AAGGAGGCCTTCCGGGTCCTCTACTACACCTACCTCAACGAGGGATTTCTCAGCTTGTGGCGCGGGAACT
CGGCCACCATGGTGCGCGTGGTGCCCTACGCCGCCATCCAGTTCAGCGCACACGAGGAGTACAAGCGCAT
CCTGGGCAGCTACTATGGCTTCCGTGGAGAAGCCCTGCCCCCTTGGCCTCGCCTCTTCGCCGGCGCACTG
GCTGGAACGACAGCCGCTTCACTGACCTACCCCCTGGACCTGGTCAGAGCGCGGATGGCCGTAACCCCGA
AGGAAATGTACAGCAACATCTTTCATGTCTTCATCCGCATCTCGAGAGAAGAGGGGCTGAAGACTCTCTA
CCATGGATTTATGCCCACCGTGCTGGGGGTCATTCCCTACGCTGGCCTGAGCTTCTTCACCTATGAGACG
CTCAAGAGCTTGCACAGAGAGTACAGCGGCCGCCGGCAGCCCTACCCCTTCGAGCGCATGATCTTCGGCG
CCTGCGCTGGCCTCATCGGGCAGTCGGCCTCGTACCCGCTGGATGTGGTGCGGCGGCGCATGCAGACGGC
CGGCGTCACGGGCTACCCGCGCGCCTCCATCGCCCGCACGCTGCGCACCATCGTGCGGGAGGAGGGCGCC
GTGCGCGGCCTCTACAAAGGCTTGAGCATGAACTGGGTCAAGGGTCCCATCGCCGTGGGCATCAGCTTCA
CCACCTTCGACCTCATGCAGATCCTGCTGCGGCACCTGCAGAGCTAG

Translation (318 aa):
MGNGVKEGPVRLHEDAEAVLSSSVSSKRDHRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKRFSA
KEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLFAGAL
AGTTAASLTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYET
LKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTGYPRASIARTLRTIVREEGA
VRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHLQS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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