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Report for CCDS11375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11375.1 Public Homo sapiens 17 KRT27 24 110 108 CCDS HistoryNCBI Gene:342574Re-query CCDS DB by CCDS ID:11375.1Re-query CCDS DB by GeneID:342574See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301656.4 ENSP00000301656.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301656.4Link to Ensembl Protein Viewer:ENSP00000301656.3Re-query CCDS DB by Nucleotide ID:ENST00000301656Re-query CCDS DB by Protein ID:ENSP00000301656
Original member Current member NCBI NM_181537.4 NP_853515.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181537.4Link to Protein Sequence:NP_853515.2Re-query CCDS DB by Nucleotide ID:NM_181537Re-query CCDS DB by Protein ID:NP_853515Link to BLAST:NP_853515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853515.2 459 Q7Z3Y8 459 100% 0 0

Chromosomal Locations for CCDS 11375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40776999 40777138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40777253 40777302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40777515 40777732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40779502 40779627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40779700 40779861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40780300 40780456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40781188 40781270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40782050 40782493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTCTGTGCGCTTTTCTTCTACCTCCAGGAGACTTGGCTCTTGCGGGGGCACTGGCTCTGTGAGGCTCT
CTAGTGGGGGAGCAGGCTTTGGGGCTGGAAACACATGCGGTGTGCCAGGCATTGGAAGTGGCTTCTCTTG
TGCTTTTGGGGGCAGCTCATCTGCAGGAGGCTATGGCGGAGGTCTGGGCGGGGGAAGTGCTTCCTGTGCT
GCCTTCACAGGGAATGAGCACGGCCTCCTCTCTGGCAATGAGAAGGTGACCATGCAGAACCTCAACGACC
GCTTGGCCTCCTACCTGGAGAATGTTCGAGCCCTAGAGGAGGCCAACGCTGACTTGGAGCAGAAGATCAA
GGGGTGGTATGAGAAATTTGGACCTGGTTCTTGCCGTGGCCTTGATCATGATTACAGCAGATATTTCCCA
ATTATTGACGAACTTAAGAACCAGATAATTTCTGCAACTACCAGTAATGCCCATGTTGTCCTGCAAAATG
ATAATGCAAGACTAACAGCTGATGACTTCAGACTAAAGTTTGAAAACGAGCTAGCGCTTCACCAGAGCGT
GGAGGCGGACATCAATGGTTTGCGAAGAGTCCTGGATGAGCTGACCTTGTGCAGAACGGACCTGGAGATC
CAGCTGGAAACTCTCAGTGAGGAGCTCGCTTACCTCAAGAAGAATCATGAGGAGGAAATGAAAGCTCTTC
AGTGCGCGGCTGGAGGCAACGTGAACGTGGAGATGAACGCGGCCCCCGGGGTAGACCTCACGGTTCTGCT
GAACAATATGCGAGCTGAGTACGAAGCCCTCGCAGAGCAGAACCGCAGGGACGCGGAGGCCTGGTTCAAC
GAAAAGAGCGCCTCGCTGCAGCAGCAGATCTCTGACGACGCTGGCGCCACCACCTCAGCCCGGAATGAGC
TTATCGAGATGAAACGCACTCTTCAAACCCTTGAGATTGAACTTCAGTCCCTCTTAGCAACGAAACACTC
CCTGGAGTGCTCCTTGACAGAGACCGAGAGTAACTACTGTGCACAGCTGGCACAGATCCAGGCTCAGATC
GGGGCCCTGGAGGAGCAGCTGCACCAGGTCAGAACCGAGACCGAGGGCCAGAAGCTCGAGTATGAGCAGC
TCCTTGACATCAAGGTCCACCTGGAAAAAGAAATTGAGACCTACTGCCTCCTGATAGATGGAGAAGATGG
CTCCTGTTCTAAATCAAAAGGCTATGGAGGCCCAGGAAATCAAACAAAAGATTCATCTAAAACCACCATT
GTCAAAACAGTTGTTGAAGAGATAGATCCTCGTGGCAAAGTTCTCTCATCCAGAGTTCACACTGTGGAAG
AGAAATCCACCAAAGTCAACAACAAGAATGAACAGAGGGTGTCTTCCTGA

Translation (459 aa):
MSVRFSSTSRRLGSCGGTGSVRLSSGGAGFGAGNTCGVPGIGSGFSCAFGGSSSAGGYGGGLGGGSASCA
AFTGNEHGLLSGNEKVTMQNLNDRLASYLENVRALEEANADLEQKIKGWYEKFGPGSCRGLDHDYSRYFP
IIDELKNQIISATTSNAHVVLQNDNARLTADDFRLKFENELALHQSVEADINGLRRVLDELTLCRTDLEI
QLETLSEELAYLKKNHEEEMKALQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFN
EKSASLQQQISDDAGATTSARNELIEMKRTLQTLEIELQSLLATKHSLECSLTETESNYCAQLAQIQAQI
GALEEQLHQVRTETEGQKLEYEQLLDIKVHLEKEIETYCLLIDGEDGSCSKSKGYGGPGNQTKDSSKTTI
VKTVVEEIDPRGKVLSSRVHTVEEKSTKVNNKNEQRVSS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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