NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4471.1 Public Homo sapiens 6 FOXQ1 24 110 108 CCDS HistoryNCBI Gene:94234Re-query CCDS DB by CCDS ID:4471.1Re-query CCDS DB by GeneID:94234See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296839.5 ENSP00000296839.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296839.5Link to Ensembl Protein Viewer:ENSP00000296839.2Re-query CCDS DB by Nucleotide ID:ENST00000296839Re-query CCDS DB by Protein ID:ENSP00000296839
Original member Current member NCBI NM_033260.4 NP_150285.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033260.4Link to Protein Sequence:NP_150285.3Re-query CCDS DB by Nucleotide ID:NM_033260Re-query CCDS DB by Protein ID:NP_150285Link to BLAST:NP_150285.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150285.3 403 Q9C009 403 100% 0 0

Chromosomal Locations for CCDS 4471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 1312705 1313916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAAGTTGGAGGTGTTCGTCCCTCGCGCGGCCCACGGGGACAAGCAGGGCAGTGACCTGGAGGGCGCGG
GCGGCAGCGACGCGCCGTCCCCGCTGTCGGCGGCGGGAGACGACTCCCTGGGCTCAGATGGGGACTGCGC
GGCCAACAGCCCGGCCGCGGGCGGCGGCGCCAGAGATACGCAGGGCGACGGCGAACAGAGTGCGGGAGGC
GGGCCGGGCGCGGAGGAGGCGATCCCGGCAGCAGCTGCTGCAGCGGTGGTGGCGGAGGGCGCGGAGGCCG
GGGCGGCGGGGCCAGGCGCGGGCGGCGCGGGGAGCGGCGAGGGTGCACGCAGCAAGCCATATACGCGGCG
GCCCAAGCCCCCCTACTCGTACATCGCGCTCATCGCCATGGCCATCCGCGACTCGGCGGGCGGGCGCTTG
ACGCTGGCGGAGATCAACGAGTACCTCATGGGCAAGTTCCCCTTTTTCCGCGGCAGCTACACGGGCTGGC
GCAACTCCGTGCGCCACAACCTTTCGCTCAACGACTGCTTCGTCAAGGTGCTGCGCGACCCCTCGCGGCC
CTGGGGCAAGGACAACTACTGGATGCTCAACCCCAACAGCGAGTACACCTTCGCCGACGGGGTCTTCCGC
CGCCGCCGCAAGCGCCTCAGCCACCGCGCGCCGGTCCCCGCGCCCGGGCTGCGGCCCGAGGAGGCCCCGG
GCCTCCCCGCCGCCCCGCCGCCCGCGCCCGCCGCCCCGGCCTCGCCCCGCATGCGCTCGCCCGCCCGCCA
GGAGGAGCGCGCCAGCCCCGCGGGCAAGTTCTCCAGCTCCTTCGCCATCGACAGCATCCTGCGCAAGCCC
TTCCGCAGCCGCCGCCTCAGGGACACGGCCCCCGGGACGACGCTTCAGTGGGGCGCCGCGCCCTGCCCGC
CGCTGCCCGCGTTCCCCGCGCTCCTCCCCGCGGCGCCCTGCAGGGCCCTGCTGCCGCTCTGCGCGTACGG
CGCGGGCGAGCCGGCGCGGCTGGGCGCGCGCGAGGCCGAGGTGCCACCGACCGCGCCGCCCCTCCTGCTT
GCACCTCTCCCGGCGGCGGCCCCCGCCAAGCCACTCCGAGGCCCGGCGGCCGGCGGCGCGCACCTGTACT
GCCCCCTGCGGCTGCCCGCAGCCCTGCAGGCGGCCTCAGTCCGCCGCCCTGGCCCGCACCTGCCGTACCC
GGTGGAGACGCTCCTAGCCTGA

Translation (403 aa):
MKLEVFVPRAAHGDKQGSDLEGAGGSDAPSPLSAAGDDSLGSDGDCAANSPAAGGGARDTQGDGEQSAGG
GPGAEEAIPAAAAAAVVAEGAEAGAAGPGAGGAGSGEGARSKPYTRRPKPPYSYIALIAMAIRDSAGGRL
TLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFR
RRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKP
FRSRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVPPTAPPLLL
APLPAAAPAKPLRGPAAGGAHLYCPLRLPAALQAASVRRPGPHLPYPVETLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH