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Report for CCDS5724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5724.1 Public Homo sapiens 7 POLR2J 24 110 108 CCDS HistoryNCBI Gene:5439Re-query CCDS DB by CCDS ID:5724.1Re-query CCDS DB by GeneID:5439See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5724.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292614.10 ENSP00000292614.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292614.10Link to Ensembl Protein Viewer:ENSP00000292614.5Re-query CCDS DB by Nucleotide ID:ENST00000292614Re-query CCDS DB by Protein ID:ENSP00000292614
Original member Current member NCBI NM_006234.6 NP_006225.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006234.6Link to Protein Sequence:NP_006225.1Re-query CCDS DB by Nucleotide ID:NM_006234Re-query CCDS DB by Protein ID:NP_006225Link to BLAST:NP_006225.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006225.1 117 P52435 117 100% 0 0

Chromosomal Locations for CCDS 5724.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102473649 102473684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102474361 102474535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102476181 102476270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102478808 102478860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGAAGATCACCATTAACAAGG
ACACCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAA
ATCACAACTCCTAAAAGACCCGCAAGTGCTATTTGCTGGCTACAAAGTCCCCCACCCCTTGGAGCACAAG
ATCATCATCCGAGTGCAGACCACGCCGGACTACAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACC
TCATCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTTCGGGTGGCCATAAAAGACAAGCAGGAAGGAATTGA
GTAG

Translation (117 aa):
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHK
IIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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