NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4132.1 Public Homo sapiens 5 SNX24 24 110 108 CCDS HistoryNCBI Gene:28966Re-query CCDS DB by CCDS ID:4132.1Re-query CCDS DB by GeneID:28966See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4132.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261369.9 ENSP00000261369.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261369.9Link to Ensembl Protein Viewer:ENSP00000261369.4Re-query CCDS DB by Nucleotide ID:ENST00000261369Re-query CCDS DB by Protein ID:ENSP00000261369
Original member Current member NCBI NM_014035.4 NP_054754.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014035.4Link to Protein Sequence:NP_054754.1Re-query CCDS DB by Nucleotide ID:NM_014035Re-query CCDS DB by Protein ID:NP_054754Link to BLAST:NP_054754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054754.1 169 Q9Y343-1 169 100% 0 0

Chromosomal Locations for CCDS 4132.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122845634 122845693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122936734 122936817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122946055 122946159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122999912 123000006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123001405 123001437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123001940 123002004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123007682 123007749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGAGGTCTACATCCCGTCCTTTCGCTATGAAGAGAGCGACCTGGAGCGGGGATACACGGTGTTTAAGA
TAGAAGTGCTAATGAATGGAAGAAAACATTTTGTTGAAAAGAGATACAGCGAATTTCATGCTTTGCACAA
AAAGCTTAAGAAATGTATAAAAACTCCAGAAATCCCTTCTAAACATGTTAGGAACTGGGTCCCCAAAGTC
TTGGAACAGCGACGACAAGGCTTGGAAACATACTTACAGGCTGTCATTTTAGAAAATGAAGAACTTCCCA
AACTGTTTCTTGATTTCCTAAATGTGCGACACTTGCCCTCTCTACCAAAGGCAGAAAGTTGTGGATCTTT
TGATGAAACAGAGTCTGAAGAGTCAAGCAAACTGTCCCACCAGCCTGTGCTGCTGTTCCTCAGGGATCCA
TATGTCTTGCCTGCAGCCAGCGATTTTCCAAATGTGGTTATTGAAGGAGTCCTCCATGGGATATTTTACC
CTCATCTACAGCCCAGGTAG

Translation (169 aa):
MEVYIPSFRYEESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKV
LEQRRQGLETYLQAVILENEELPKLFLDFLNVRHLPSLPKAESCGSFDETESEESSKLSHQPVLLFLRDP
YVLPAASDFPNVVIEGVLHGIFYPHLQPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH