CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS45253.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
45253.1 |
Public |
Homo sapiens |
15 |
PATL2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:197135](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:45253.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:197135](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 45253.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000434130.6 |
ENSP00000416673.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000434130.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000416673.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000434130](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000416673](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000682850.1 |
ENSP00000508024.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000682850.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000508024.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000682850](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000508024](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001145112.2 |
NP_001138584.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001145112.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001138584.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001145112](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001138584](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001138584.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001387261.1 |
NP_001374190.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001387261.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001374190.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001387261](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001374190](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001374190.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001387262.1 |
NP_001374191.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001387262.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001374191.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001387262](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001374191](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001374191.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001387263.1 |
NP_001374192.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001387263.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001374192.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001387263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001374192](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001374192.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 45253.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1632 nt): ATGAATTGCCTTGAAGGGCCAGGTAAGACCTGTGGCCCCTTGGCTTCTGAGGAGGAGCTGGTGTCTGCCT GCCAGTTGGAAAAAGAAGAAGAGAATGAAGGGGAGGAGGAGGAAGAGGAGGAGGACGAGGAGGATCTGGA CCCAGATCTGGACCCAGACCTAGAGGAGGAAGAGAATGATCTTGGGGATCCAGCTGTACTTGGTGCTGTC CACAACACCCAGAGAGCTCTGCTTAGCTCCCCTGGAGTCAAGGCCCCTGGTATGCTGGGAATGTCACTTG CCTCCTTGCATTTTCTGTGGCAGACCTTGGACTACCTGTCGCCCATCCCTTTCTGGCCTACATTTCCCAG CACCAGCTCTCCAGCACAGCACTTTGGACCTCGGCTGCCCTCACCAGACCCAACTCTCTTCTGCAGCCTG CTGACCTCGTGGCCCCCTAGGTTCAGTCATCTGACCCAGCTCCACCCTCGGCACCAACGAATCTTGCAGC AGCAGCAGCATAGTCAAACACCAAGTCCCCCAGCCAAGAAGCCTTGGTCTCAGCAGCCAGACCCCTATGC TAACCTCATGACCAGAAAAGAGAAGGACTGGGTGATAAAAGTGCAGATGGTGCAGCTGCAGAGTGCAAAA CCCCGCCTGGATGACTACTATTACCAGGAATATTACCAGAAGCTAGAGAAGAAGCAGGCAGACGAAGAGC TACTTGGACGAAGAAACCGGGTTGAGTCCCTCAAGCTGGTAACGCCTTACATTCCGAAGGCAGAGGCTTA TGAGTCCGTGGTCCGAATCGAGGGTTCCCTGGGCCAGGTAGCTGTGTCGACATGCTTCAGCCCTCGCCGA GCTATTGATGCGGTACCCCATGGAACTCAAGAGCAGGATATAGAAGCTGCAAGCAGTCAGAGGCTTCGGG TATTATACCGGATTGAGAAGATGTTCCTTCAGTTACTAGAAATAGAGGAAGGCTGGAAGTATAGGCCTCC ACCGCCCTGCTTTTCTGAGCAGCAAAGCAACCAGGTTGAGAAGCTCTTCCAGACCTTAAAGACCCAGGAG CAGAACAACCTGGAAGAGGCAGCAGATGGCTTCCTGCAGGTGCTCTCTGTGAGGAAGGGGAAGGCCCTGG TGGCCCGGCTGCTCCCCTTCCTGCCCCAGGATCAGGCTGTTACCATTCTTTTGGCTATCACCCACCATCT GCCCCTCCTGGTCCGGAGGGATGTGGCTGATCAGGCCCTACAAATGTTATTCAAACCTCTGGGCAAATGT ATTAGTCACTTGACCCTCCACGAACTCCTCCAAGGACTTCAGGGATTAACGCTGTTGCCACCTGGCTCCT CAGAGCGGCCAGTCACCGTGGTGCTTCAGAATCAGTTTGGAATATCTTTGCTCTATGCCCTGCTGAGCCA TGGGGAGCAACTGGTATCGCTGCATTCTTCCCTAGAGGAACCCAACAGTGACCATACAGCTTGGACAGAC ATGGTGGTTCTGATTGCCTGGGAGATAGCCCAAATGCCTACAGCCTCTCTGGCAGAACCCCTAGCTTTCC CCAGCAACCTACTTCCCCTGTTCTGTCACCACGTGGACAAACAATTGGTTCAGCAGCTGGAGGCCAGGAT GGAGTTTGCCTGGATTTACTGA
Translation (543 aa): MNCLEGPGKTCGPLASEEELVSACQLEKEEENEGEEEEEEEDEEDLDPDLDPDLEEEENDLGDPAVLGAV HNTQRALLSSPGVKAPGMLGMSLASLHFLWQTLDYLSPIPFWPTFPSTSSPAQHFGPRLPSPDPTLFCSL LTSWPPRFSHLTQLHPRHQRILQQQQHSQTPSPPAKKPWSQQPDPYANLMTRKEKDWVIKVQMVQLQSAK PRLDDYYYQEYYQKLEKKQADEELLGRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPRR AIDAVPHGTQEQDIEAASSQRLRVLYRIEKMFLQLLEIEEGWKYRPPPPCFSEQQSNQVEKLFQTLKTQE QNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILLAITHHLPLLVRRDVADQALQMLFKPLGKC ISHLTLHELLQGLQGLTLLPPGSSERPVTVVLQNQFGISLLYALLSHGEQLVSLHSSLEEPNSDHTAWTD MVVLIAWEIAQMPTASLAEPLAFPSNLLPLFCHHVDKQLVQQLEARMEFAWIY
|