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Report for CCDS882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
882.1 Public Homo sapiens 1 NGF 24 110 108 CCDS HistoryNCBI Gene:4803Re-query CCDS DB by CCDS ID:882.1Re-query CCDS DB by GeneID:4803See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 882.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369512.3 ENSP00000358525.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369512.3Link to Ensembl Protein Viewer:ENSP00000358525.2Re-query CCDS DB by Nucleotide ID:ENST00000369512Re-query CCDS DB by Protein ID:ENSP00000358525
Original member Current member EBI ENST00000676038.2 ENSP00000502380.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676038.2Link to Ensembl Protein Viewer:ENSP00000502380.1Re-query CCDS DB by Nucleotide ID:ENST00000676038Re-query CCDS DB by Protein ID:ENSP00000502380
Original member Current member EBI ENST00000675637.2 ENSP00000502831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675637.2Link to Ensembl Protein Viewer:ENSP00000502831.1Re-query CCDS DB by Nucleotide ID:ENST00000675637Re-query CCDS DB by Protein ID:ENSP00000502831
Original member Current member EBI ENST00000680752.1 ENSP00000505558.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680752.1Link to Ensembl Protein Viewer:ENSP00000505558.1Re-query CCDS DB by Nucleotide ID:ENST00000680752Re-query CCDS DB by Protein ID:ENSP00000505558
Original member Current member EBI ENST00000680116.1 ENSP00000505694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680116.1Link to Ensembl Protein Viewer:ENSP00000505694.1Re-query CCDS DB by Nucleotide ID:ENST00000680116Re-query CCDS DB by Protein ID:ENSP00000505694
Original member Current member EBI ENST00000679806.1 ENSP00000506492.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679806.1Link to Ensembl Protein Viewer:ENSP00000506492.1Re-query CCDS DB by Nucleotide ID:ENST00000679806Re-query CCDS DB by Protein ID:ENSP00000506492
Original member Current member EBI ENST00000680540.1 ENSP00000506569.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680540.1Link to Ensembl Protein Viewer:ENSP00000506569.1Re-query CCDS DB by Nucleotide ID:ENST00000680540Re-query CCDS DB by Protein ID:ENSP00000506569
Original member Current member NCBI NM_002506.3 NP_002497.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002506.3Link to Protein Sequence:NP_002497.2Re-query CCDS DB by Nucleotide ID:NM_002506Re-query CCDS DB by Protein ID:NP_002497Link to BLAST:NP_002497.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002497.2 241 P01138 241 100% 0 0

Chromosomal Locations for CCDS 882.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 115286070 115286795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGTCCATGTTGTTCTACACTCTGATCACAGCTTTTCTGATCGGCATACAGGCGGAACCACACTCAGAGA
GCAATGTCCCTGCAGGACACACCATCCCCCAAGCCCACTGGACTAAACTTCAGCATTCCCTTGACACTGC
CCTTCGCAGAGCCCGCAGCGCCCCGGCAGCGGCGATAGCTGCACGCGTGGCGGGGCAGACCCGCAACATT
ACTGTGGACCCCAGGCTGTTTAAAAAGCGGCGACTCCGTTCACCCCGTGTGCTGTTTAGCACCCAGCCTC
CCCGTGAAGCTGCAGACACTCAGGATCTGGACTTCGAGGTCGGTGGTGCTGCCCCCTTCAACAGGACTCA
CAGGAGCAAGCGGTCATCATCCCATCCCATCTTCCACAGGGGCGAATTCTCGGTGTGTGACAGTGTCAGC
GTGTGGGTTGGGGATAAGACCACCGCCACAGACATCAAGGGCAAGGAGGTGATGGTGTTGGGAGAGGTGA
ACATTAACAACAGTGTATTCAAACAGTACTTTTTTGAGACCAAGTGCCGGGACCCAAATCCCGTTGACAG
CGGGTGCCGGGGCATTGACTCAAAGCACTGGAACTCATATTGTACCACGACTCACACCTTTGTCAAGGCG
CTGACCATGGATGGCAAGCAGGCTGCCTGGCGGTTTATCCGGATAGATACGGCCTGTGTGTGTGTGCTCA
GCAGGAAGGCTGTGAGAAGAGCCTGA

Translation (241 aa):
MSMLFYTLITAFLIGIQAEPHSESNVPAGHTIPQAHWTKLQHSLDTALRRARSAPAAAIAARVAGQTRNI
TVDPRLFKKRRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVS
VWVGDKTTATDIKGKEVMVLGEVNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKA
LTMDGKQAAWRFIRIDTACVCVLSRKAVRRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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