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Report for CCDS87415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87415.1 Public Homo sapiens 6 LMBRD1 24 110 108 CCDS HistoryNCBI Gene:55788Re-query CCDS DB by CCDS ID:87415.1Re-query CCDS DB by GeneID:55788See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370570.6 ENSP00000359602.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370570.6Link to Ensembl Protein Viewer:ENSP00000359602.1Re-query CCDS DB by Nucleotide ID:ENST00000370570Re-query CCDS DB by Protein ID:ENSP00000359602
Original member Current member EBI ENST00000647964.1 ENSP00000496784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647964.1Link to Ensembl Protein Viewer:ENSP00000496784.1Re-query CCDS DB by Nucleotide ID:ENST00000647964Re-query CCDS DB by Protein ID:ENSP00000496784
Original member Current member EBI ENST00000650107.1 ENSP00000497124.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650107.1Link to Ensembl Protein Viewer:ENSP00000497124.1Re-query CCDS DB by Nucleotide ID:ENST00000650107Re-query CCDS DB by Protein ID:ENSP00000497124
Original member Current member EBI ENST00000648743.1 ENSP00000497135.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648743.1Link to Ensembl Protein Viewer:ENSP00000497135.1Re-query CCDS DB by Nucleotide ID:ENST00000648743Re-query CCDS DB by Protein ID:ENSP00000497135
Original member Current member EBI ENST00000648394.1 ENSP00000497302.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648394.1Link to Ensembl Protein Viewer:ENSP00000497302.1Re-query CCDS DB by Nucleotide ID:ENST00000648394Re-query CCDS DB by Protein ID:ENSP00000497302
Original member Current member EBI ENST00000649679.1 ENSP00000497387.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649679.1Link to Ensembl Protein Viewer:ENSP00000497387.1Re-query CCDS DB by Nucleotide ID:ENST00000649679Re-query CCDS DB by Protein ID:ENSP00000497387
Original member Current member EBI ENST00000649918.1 ENSP00000497487.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649918.1Link to Ensembl Protein Viewer:ENSP00000497487.1Re-query CCDS DB by Nucleotide ID:ENST00000649918Re-query CCDS DB by Protein ID:ENSP00000497487
Original member Current member EBI ENST00000650035.1 ENSP00000497703.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650035.1Link to Ensembl Protein Viewer:ENSP00000497703.1Re-query CCDS DB by Nucleotide ID:ENST00000650035Re-query CCDS DB by Protein ID:ENSP00000497703
Original member Current member EBI ENST00000649028.1 ENSP00000498034.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649028.1Link to Ensembl Protein Viewer:ENSP00000498034.1Re-query CCDS DB by Nucleotide ID:ENST00000649028Re-query CCDS DB by Protein ID:ENSP00000498034
Original member Current member EBI ENST00000648168.1 ENSP00000498178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648168.1Link to Ensembl Protein Viewer:ENSP00000498178.1Re-query CCDS DB by Nucleotide ID:ENST00000648168Re-query CCDS DB by Protein ID:ENSP00000498178
Original member Current member NCBI NM_001363722.2 NP_001350651.1 Accepted alive Link to Nucleotide Sequence:NM_001363722.2Link to Protein Sequence:NP_001350651.1Re-query CCDS DB by Nucleotide ID:NM_001363722Re-query CCDS DB by Protein ID:NP_001350651Link to BLAST:NP_001350651.1
Original member Current member NCBI NM_001367271.1 NP_001354200.1 Accepted alive Link to Nucleotide Sequence:NM_001367271.1Link to Protein Sequence:NP_001354200.1Re-query CCDS DB by Nucleotide ID:NM_001367271Re-query CCDS DB by Protein ID:NP_001354200Link to BLAST:NP_001354200.1
Original member Current member NCBI NM_001367272.1 NP_001354201.1 Accepted alive Link to Nucleotide Sequence:NM_001367272.1Link to Protein Sequence:NP_001354201.1Re-query CCDS DB by Nucleotide ID:NM_001367272Re-query CCDS DB by Protein ID:NP_001354201Link to BLAST:NP_001354201.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350651.1 467 Q9NUN5-3 467 100% 0 0
NP_001354200.1 467 Q9NUN5-3 467 100% 0 0
NP_001354201.1 467 Q9NUN5-3 467 100% 0 0

Chromosomal Locations for CCDS 87415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 69676158 69676271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69676450 69676541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69697563 69697641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69699043 69699192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69700765 69700869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69701443 69701545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69701889 69701953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69713645 69713797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69718956 69719081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69737942 69738015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69741789 69741877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69749341 69749408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69752259 69752356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69780494 69780554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69790296 69790322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGAAAAATCAAAATGGTACATTTAAGGACTGGGCTAATGCTAATGTCAGCAGACAGATTGAGGACACTG
TATTATACGGTTACTATACTTTATATTCTGTTATATTGTTCTGTGTGTTCTTCTGGATCCCTTTTGTCTA
CTTCTATTATGAAGAAAAGGATGATGATGATACTAGTAAATGTACTCAAATTAAAACGGCACTCAAGTAT
ACTTTGGGATTTGTTGTGATTTGTGCACTGCTTCTTTTAGTTGGTGCCTTTGTTCCATTGAATGTTCCCA
ATAACAAAAATTCTACAGAGTGGGAAAAAGTGAAGTCCCTATTTGAAGAACTTGGAAGTAGTCATGGTTT
AGCTGCATTGTCATTTTCTATCAGTTCTCTGACCTTGATTGGAATGTTGGCAGCTATAACTTACACAGCC
TATGGCATGTCTGCGTTACCTTTAAATCTGATAAAAGGCACTAGAAGCGCTGCTTATGAACGTTTGGAAA
ACACTGAAGACATTGAAGAAGTAGAACAACACATTCAAACGATTAAATCAAAAAGCAAAGATGGTCGACC
TTTGCCAGCAAGGGATAAACGCGCCTTAAAACAATTTGAAGAAAGGTTACGAACACTTAAGAAGAGAGAG
AGGCATTTAGAATTCATTGAAAACAGCTGGTGGACAAAATTTTGTGGCGCTCTGCGTCCCCTGAAGATCG
TCTGGGGAATATTTTTCATCTTAGTTGCATTGCTGTTTGTAATTTCTCTCTTCTTGTCAAATTTAGATAA
AGCTCTTCATTCAGCTGGAATAGATTCTGGTTTCATAATTTTTGGAGCTAACCTGAGTAATCCACTGAAT
ATGCTTTTGCCTTTACTACAAACAGTTTTCCCTCTTGATTATATTCTTATAACAATTATTATTATGTACT
TTATTTTTACTTCAATGGCAGGAATTCGAAATATTGGCATATGGTTCTTTTGGATTAGATTATATAAAAT
CAGAAGAGGTAGAACCAGGCCCCAAGCACTCCTTTTTCTCTGCATGATACTTCTGCTTATTGTCCTTCAC
ACTAGCTACATGATTTATAGTCTTGCTCCCCAATATGTTATGTATGGAAGCCAAAATTACTTAATAGAGA
CTAATATAACTTCTGATAATCATAAAGGCAATTCAACCCTTTCTGTGCCAAAGAGATGTGATGCAGATGC
TCCTGAAGATCAGTGTACTGTTACCCGGACATACCTATTCCTTCACAAGTTCTGGTTCTTCAGTGCTGCT
TACTATTTTGGTAACTGGGCCTTTCTTGGGGTATTTTTGATTGGATTAATTGTATCCTGTTGTAAAGGGA
AGAAATCGGTTATTGAAGGAGTAGATGAAGATTCAGACATAAGTGATGATGAGCCCTCTGTCTATTCTGC
TTGA

Translation (467 aa):
MKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQIKTALKY
TLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSLFEELGSSHGLAALSFSISSLTLIGMLAAITYTA
YGMSALPLNLIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLKKRE
RHLEFIENSWWTKFCGALRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSNPLN
MLLPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLIVLH
TSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVPKRCDADAPEDQCTVTRTYLFLHKFWFFSAA
YYFGNWAFLGVFLIGLIVSCCKGKKSVIEGVDEDSDISDDEPSVYSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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